Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1287

Experiments: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1286: 9654 - HMMPfam-short chain dehydrogenase-PF00106,SUPERFAMILY--SSF51735, at 834621 to 836012 9654 mRNA_1287: 9655 - KOG1087 Cytosolic sorting protein GGA2/TOM1, at 836321 to 838675 9655 mRNA_1288: 9656 - HMMPfam-CFEM domain-PF05730,SMART--SM00747, at 839397 to 840221 9656

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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835,512 - 9654 mRNA_1286 0.64 -0.5
835,976 - 0.8
836,088 + -1.0
836,091 - -1.6
836,108 - -0.1
836,110 + 0.1
836,118 - -0.1
836,120 - 1.2
836,146 + -0.5
836,257 + -0.3
836,259 + -0.3
836,273 - 0.6
836,279 - -0.1
836,283 - 0.0
836,290 + 0.4
836,292 + -1.4
836,293 + 1.0
836,294 + 0.0
836,295 - 1.4
836,300 + 0.3
836,418 - 0.7
836,581 - 9655 mRNA_1287 0.11 -0.8
836,717 + 9655 mRNA_1287 0.17 -0.1
837,156 - 9655 mRNA_1287 0.35 0.2
838,044 - 9655 mRNA_1287 0.73 -1.4
838,340 - 9655 mRNA_1287 0.86 0.1
838,637 - 0.5
838,681 - 0.5
838,684 + 0.1
839,340 - 0.0
839,363 + 1.9
839,411 - -1.5
839,422 + 0.6