Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1280

Experiments: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1280: 9648 - HMMPfam-GDSL-like Lipase/Acylhydrolase-PF00657, at 825311 to 827101 9648 mRNA_1281: 9649 - HMMPfam-Peptidase M50B-like-PF13398, at 827341 to 829667 9649

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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824,386 - 3.4
824,792 - -0.4
824,796 + -0.2
824,800 + 1.8
824,821 + 0.4
824,821 + 1.1
824,866 + -0.4
824,874 - 0.0
824,874 + 1.5
824,894 + -0.1
825,013 + -0.5
825,046 - 0.4
825,053 + -0.2
825,054 - 0.2
825,095 - 0.7
825,116 - -0.3
825,141 + 2.5
825,141 + -1.1
825,178 - -0.3
825,184 - -0.4
825,190 + -0.3
825,191 - 0.7
825,193 - 0.3
825,198 + -0.1
825,200 - -2.2
825,206 + -0.3
825,211 + 1.4
825,211 + 2.5
825,224 - 0.3
825,241 - -0.8
825,243 + 0.3
825,244 - -0.2
825,245 - 0.6
825,359 - -1.3
825,376 - 0.3
825,819 - 9648 mRNA_1280 0.28 0.5
825,826 + 9648 mRNA_1280 0.29 -0.1
826,980 + 0.5
826,982 + 0.3
826,986 + 1.1
827,048 + 0.3
827,056 + 0.6
827,147 - 1.1
827,293 - 0.9
827,305 + 2.2
827,345 + 0.9
827,413 + 1.8
827,425 + -0.4
827,444 + 0.2
827,495 - -0.2
827,512 - 0.8
827,593 - 9649 mRNA_1281 0.11 0.0
827,594 + 9649 mRNA_1281 0.11 -0.2
827,653 + 9649 mRNA_1281 0.13 0.3
827,858 + 9649 mRNA_1281 0.22 0.3
827,878 - 9649 mRNA_1281 0.23 -1.0
827,983 - 9649 mRNA_1281 0.28 0.5