Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1228

Experiments: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1227: 9595 - KOG1318 Helix loop helix transcription factor EB, at 696629 to 699042 9595 mRNA_1228: 9596 - K00693 GYS glycogen synthase, at 699587 to 703104 9596 mRNA_1229: 9597 - SUPERFAMILY--SSF52047, at 703452 to 704884 9597

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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699,044 - 1.3
699,135 + -0.8
699,138 + 1.6
699,169 + -0.8
699,250 - -0.1
699,253 - -0.3
699,262 + -1.1
699,263 + -0.3
699,263 - -1.3
699,278 + 0.2
699,326 - -0.3
699,346 + 0.6
699,356 - 0.3
699,358 - -0.1
699,368 - 0.3
699,377 + -0.1
699,379 + 1.3
699,389 - 2.8
699,409 - -0.5
699,409 + -0.7
699,423 - 0.3
699,423 - -0.3
699,425 - 0.3
699,432 - 0.5
699,449 - 0.1
699,473 + 0.4
699,475 + 0.5
699,476 - 0.2
699,487 + 0.3
699,487 - -0.5
699,502 + -0.6
699,504 + -0.0
699,519 - 1.1
699,520 - -1.5
699,531 - 0.1
699,533 - 0.3
699,534 + -0.0
699,669 + 0.4
699,671 + 0.5
699,677 + 2.3
699,684 + 0.3
699,691 + 1.1
699,698 + 1.0
699,828 + 0.4
699,831 - -1.0
699,831 - 1.5
699,834 - 1.3
700,568 + 9596 mRNA_1228 0.28 -0.3
700,722 - 9596 mRNA_1228 0.32 0.0
701,166 + 9596 mRNA_1228 0.45 0.1
701,288 - 9596 mRNA_1228 0.48 3.1
701,323 - 9596 mRNA_1228 0.49 0.4
701,829 - 9596 mRNA_1228 0.64 0.7
702,187 - 9596 mRNA_1228 0.74 0.0
702,191 + 9596 mRNA_1228 0.74 1.7
702,200 - 9596 mRNA_1228 0.74 1.3
702,207 - 9596 mRNA_1228 0.74 0.7
702,209 + 9596 mRNA_1228 0.75 0.7
702,763 - -0.9
702,787 + -0.0
703,072 - -0.3
703,125 - 1.9
703,323 + -1.5
703,326 - -2.8
703,650 - 9597 mRNA_1229 0.14 1.1
704,070 + 9597 mRNA_1229 0.43 -0.8