Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1222

Experiments: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1221: 9589 - K01810 GPI, pgi glucose-6-phosphate isomerase, at 679841 to 682126 9589 mRNA_1222: 9590 - BLAST proteophosphoglycan ppg4 [Moniliophthora roreri M..., at 682421 to 686506 9590 mRNA_1223: 9591 - PRINTS-Proline rich extensin signature-PR01217, at 687384 to 689890 9591

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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682,145 + -0.6
682,446 + -0.2
682,646 + 0.8
682,646 - 0.3
683,192 + 9590 mRNA_1222 0.19 1.3
683,418 + 9590 mRNA_1222 0.24 0.7
683,461 - 9590 mRNA_1222 0.25 -0.6
683,470 - 9590 mRNA_1222 0.26 0.8
683,563 - 9590 mRNA_1222 0.28 0.9
683,586 - 9590 mRNA_1222 0.29 -1.3
683,599 + 9590 mRNA_1222 0.29 -0.3
683,719 - 9590 mRNA_1222 0.32 0.2
683,891 - 9590 mRNA_1222 0.36 0.4
683,992 + 9590 mRNA_1222 0.38 2.1
684,002 - 9590 mRNA_1222 0.39 0.4
684,713 + 9590 mRNA_1222 0.56 1.7
684,819 - 9590 mRNA_1222 0.59 0.8
685,003 + 9590 mRNA_1222 0.63 -1.3
685,052 - 9590 mRNA_1222 0.64 0.0
685,272 + 9590 mRNA_1222 0.70 0.0
685,604 + 9590 mRNA_1222 0.78 1.1
685,708 + 9590 mRNA_1222 0.80 -0.4
685,864 + 9590 mRNA_1222 0.84 1.4
685,905 - 9590 mRNA_1222 0.85 0.2
686,167 + 0.4
686,169 - 0.2
686,211 - 0.3
686,294 - 2.2
686,610 - 0.3
686,681 - 0.2
686,734 + 0.2
686,767 + 0.4
686,790 + 0.4
686,826 - 0.4
686,843 - -0.2
686,880 - -0.4
686,885 - -0.7
686,887 - 0.9
686,889 + -0.0
686,900 + 0.4
686,917 + 1.9
686,923 + -1.1
686,954 + -1.1
686,964 - 0.1
686,988 - 2.4
686,988 - -0.1
687,015 - -0.7
687,018 + -0.1
687,029 + 2.5
687,033 + 2.0
687,043 - -1.4
687,046 + 1.7
687,052 + 0.1
687,061 + -0.5
687,064 - -0.2
687,186 - -0.3
687,192 - -0.5
687,214 + -0.6
687,363 + 0.2
687,497 + 0.9