Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1183

Experiments: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1182: 9550 - K12816 CDC40, PRP17 pre-mRNA-processing factor 17, at 593740 to 596442 9550 mRNA_1183: 9551 - KOG2533 Permease of the major facilitator superfamily, at 596710 to 598781 9551 mRNA_1184: 9552 - KOG0143 Iron/ascorbate family oxidoreductases, at 599340 to 600971 9552

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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596,527 - 0.4
596,543 - -1.5
596,559 + 0.3
596,559 + -1.0
596,578 - 2.0
596,579 - -0.8
596,596 + -0.8
596,885 - 0.7
596,903 + 0.7
596,904 + 0.6
597,192 - 9551 mRNA_1183 0.23 -0.3
597,228 - 9551 mRNA_1183 0.25 0.0
597,318 - 9551 mRNA_1183 0.29 0.1
597,387 - 9551 mRNA_1183 0.33 1.0
597,411 + 9551 mRNA_1183 0.34 0.5
597,431 - 9551 mRNA_1183 0.35 -0.3
597,655 - 9551 mRNA_1183 0.46 0.9
597,676 + 9551 mRNA_1183 0.47 0.5
597,682 + 9551 mRNA_1183 0.47 -2.3
598,060 + 9551 mRNA_1183 0.65 -0.1
598,068 - 9551 mRNA_1183 0.66 0.1
598,184 + 9551 mRNA_1183 0.71 0.6
598,284 - 9551 mRNA_1183 0.76 0.0
598,381 + 9551 mRNA_1183 0.81 -1.1
598,422 + 9551 mRNA_1183 0.83 -0.0
598,658 - 1.0
598,663 + 0.9
598,679 - 0.6
598,705 + 0.6
598,802 - 0.3
598,831 + 0.1
598,963 - 0.3
598,965 - -0.1
598,969 - -0.5
598,970 + -1.0
598,978 + 0.4
598,983 + 1.2
598,985 + 1.2
599,000 - -0.7
599,002 - -0.2
599,004 - 0.5
599,012 + -1.0
599,149 - 1.2
599,181 + 2.1
599,295 + 0.0
599,298 - 1.2
599,299 - 2.2
599,314 + -0.4
599,410 + -0.3
599,455 - 0.8