Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1009

Experiments: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1008: 9376 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 193375 to 193873 9376 mRNA_1009: 9377 - K12659 ARG56 N-acetyl-gamma-glutamyl-phosphate reductase / acetylglutamate kinase, at 194159 to 197453 9377 mRNA_1010: 9378 - K16569 TUBGCP2, GCP2 gamma-tubulin complex component 2, at 198113 to 201234 9378

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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193,240 - -0.4
193,418 + 2.3
193,652 - 9376 mRNA_1008 0.56 -1.5
193,652 - 9376 mRNA_1008 0.56 0.6
193,668 - 9376 mRNA_1008 0.59 1.7
193,680 + 9376 mRNA_1008 0.61 0.1
193,806 - 9376 mRNA_1008 0.86 0.4
193,830 - -1.7
193,832 + 0.6
193,950 - -0.1
193,953 - 0.8
193,963 - 0.6
193,965 - 0.4
193,971 + -0.5
193,971 - 0.3
193,974 - -0.3
193,974 - -1.0
193,975 + 1.5
193,978 - -0.5
193,988 - 0.4
193,990 + 0.1
194,000 + -0.4
194,104 + 1.2
194,109 - 1.6
194,110 + 1.0
194,112 - 0.3
194,140 + 2.4
194,231 + -0.4
194,236 + 0.2
194,255 - -0.7
194,396 + -0.2
194,402 - 0.7
194,426 - -0.2
194,575 + 9377 mRNA_1009 0.13 0.5
194,576 + 9377 mRNA_1009 0.13 0.9
195,021 + 9377 mRNA_1009 0.26 -0.4
195,179 + 9377 mRNA_1009 0.31 -0.4
195,323 + 9377 mRNA_1009 0.35 -1.5
195,497 + 9377 mRNA_1009 0.41 -1.5
195,593 + 9377 mRNA_1009 0.44 0.4
195,747 + 9377 mRNA_1009 0.48 -0.2
195,921 + 9377 mRNA_1009 0.53 0.4
196,047 + 9377 mRNA_1009 0.57 2.2
196,239 + 9377 mRNA_1009 0.63 -0.4
196,327 + 9377 mRNA_1009 0.66 -1.2
196,328 - 9377 mRNA_1009 0.66 0.5
196,352 + 9377 mRNA_1009 0.67 -0.4
196,397 - 9377 mRNA_1009 0.68 -0.2
196,460 - 9377 mRNA_1009 0.70 -0.2
196,605 - 9377 mRNA_1009 0.74 0.2
196,653 + 9377 mRNA_1009 0.76 0.5
196,905 - 9377 mRNA_1009 0.83 0.9
197,059 - 9377 mRNA_1009 0.88 1.3
197,078 - 9377 mRNA_1009 0.89 0.0
197,224 + 0.2
197,237 - 1.7
197,345 + -3.1
197,449 - -1.3
197,506 - 0.7