Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1005

Experiments: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1004: 9372 - K02220 CLB1_2 G2/mitotic-specific cyclin 1/2, at 183792 to 186232 9372 mRNA_1005: 9373 - K08794 CAMK1 calcium/calmodulin-dependent protein kinase I, at 186567 to 188548 9373 mRNA_1006: 9374 - KOG4569 Predicted lipase, at 188789 to 191273 9374

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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185,905 - 9372 mRNA_1004 0.87 -1.4
186,118 - 1.1
186,338 - -0.2
186,410 - -0.7
186,489 - 0.2
186,490 + 0.2
186,516 + 0.4
186,517 - 2.0
186,647 - -1.2
186,653 + 0.1
186,804 + 9373 mRNA_1005 0.12 1.0
186,909 - 9373 mRNA_1005 0.17 2.7
186,933 + 9373 mRNA_1005 0.18 0.6
186,934 - 9373 mRNA_1005 0.19 -0.4
186,957 - 9373 mRNA_1005 0.20 0.2
186,962 + 9373 mRNA_1005 0.20 -0.2
186,977 - 9373 mRNA_1005 0.21 0.1
187,093 + 9373 mRNA_1005 0.27 3.4
187,503 + 9373 mRNA_1005 0.47 1.3
187,512 - 9373 mRNA_1005 0.48 0.2
187,542 + 9373 mRNA_1005 0.49 0.3
187,964 + 9373 mRNA_1005 0.70 3.1
187,984 - 9373 mRNA_1005 0.71 0.9
187,984 - 9373 mRNA_1005 0.71 1.0
188,119 - 9373 mRNA_1005 0.78 -0.0
188,172 + 9373 mRNA_1005 0.81 -1.3
188,381 - -0.5
188,553 + 0.3
188,565 + 0.1
188,665 - -0.8
188,724 + 0.4
188,859 + -0.3
188,880 + -0.0
189,060 - 9374 mRNA_1006 0.11 1.5
189,140 - 9374 mRNA_1006 0.14 0.5
189,169 + 9374 mRNA_1006 0.15 0.4
189,201 - 9374 mRNA_1006 0.17 0.7
189,351 - 9374 mRNA_1006 0.23 -0.0