Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_926

Experiments: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_926: 9294 - K20647 ARHGAP32 Rho GTPase-activating protein 32, at 2208213 to 2211495 9294 mRNA_927: 9295 - KOG1611 Predicted short chain-type dehydrogenase, at 2211766 to 2213032 9295

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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2,207,237 + 2.5
2,207,350 + 0.6
2,207,373 - -2.1
2,207,528 + 0.9
2,207,556 - 0.4
2,207,606 - 1.2
2,207,643 - -1.7
2,207,653 - -0.2
2,207,791 + 0.7
2,207,794 - 0.1
2,207,801 - -1.8
2,207,803 + -0.9
2,207,806 - 0.2
2,207,813 + -1.2
2,207,815 - -0.2
2,207,823 + -0.2
2,207,825 - 0.6
2,207,927 - -0.1
2,207,948 + 0.6
2,207,965 - -0.2
2,207,966 + 3.2
2,207,968 - -0.2
2,207,973 + 0.9
2,208,099 - 0.7
2,208,208 - 0.3
2,208,216 - 0.8
2,208,345 - -0.3
2,208,402 - -1.9
2,208,424 + 2.6
2,208,573 - 9294 mRNA_926 0.11 -1.6
2,208,595 + 9294 mRNA_926 0.12 0.7
2,208,627 - 9294 mRNA_926 0.13 0.4
2,208,648 - 9294 mRNA_926 0.13 0.4
2,208,667 - 9294 mRNA_926 0.14 -2.8
2,208,691 + 9294 mRNA_926 0.15 2.5
2,208,729 - 9294 mRNA_926 0.16 -0.9
2,208,729 - 9294 mRNA_926 0.16 -1.7
2,208,746 - 9294 mRNA_926 0.16 -2.5
2,208,763 - 9294 mRNA_926 0.17 -0.2
2,208,841 + 9294 mRNA_926 0.19 1.3
2,208,921 - 9294 mRNA_926 0.22 0.4
2,208,984 - 9294 mRNA_926 0.23 -1.0
2,209,066 - 9294 mRNA_926 0.26 0.4
2,209,066 - 9294 mRNA_926 0.26 -0.1
2,209,073 + 9294 mRNA_926 0.26 0.6
2,209,117 + 9294 mRNA_926 0.28 -1.9
2,209,273 + 9294 mRNA_926 0.32 2.4
2,209,330 - 9294 mRNA_926 0.34 -0.3
2,209,331 + 9294 mRNA_926 0.34 0.2
2,209,341 - 9294 mRNA_926 0.34 0.2
2,209,397 - 9294 mRNA_926 0.36 -0.8
2,209,551 + 9294 mRNA_926 0.41 1.3
2,209,573 - 9294 mRNA_926 0.41 -2.0
2,209,693 - 9294 mRNA_926 0.45 -0.7
2,209,826 + 9294 mRNA_926 0.49 1.4
2,209,844 - 9294 mRNA_926 0.50 -0.7
2,209,857 + 9294 mRNA_926 0.50 -0.6
2,209,980 - 9294 mRNA_926 0.54 -0.2
2,210,060 - 9294 mRNA_926 0.56 -0.2
2,210,083 - 9294 mRNA_926 0.57 -0.7
2,210,159 - 9294 mRNA_926 0.59 1.0
2,210,235 - 9294 mRNA_926 0.62 -0.7
2,210,272 + 9294 mRNA_926 0.63 0.6
2,210,334 - 9294 mRNA_926 0.65 -0.6
2,210,370 - 9294 mRNA_926 0.66 0.2
2,210,372 - 9294 mRNA_926 0.66 -1.8
2,210,415 + 9294 mRNA_926 0.67 -0.3
2,210,425 - 9294 mRNA_926 0.67 -1.5
2,210,425 - 9294 mRNA_926 0.67 -0.7
2,210,431 - 9294 mRNA_926 0.68 -0.6
2,210,442 + 9294 mRNA_926 0.68 -0.2
2,210,448 - 9294 mRNA_926 0.68 0.6
2,210,454 + 9294 mRNA_926 0.68 -0.2
2,210,602 - 9294 mRNA_926 0.73 0.2
2,210,619 - 9294 mRNA_926 0.73 -1.5
2,210,649 + 9294 mRNA_926 0.74 0.7
2,210,717 - 9294 mRNA_926 0.76 0.2
2,210,745 - 9294 mRNA_926 0.77 0.5
2,210,747 + 9294 mRNA_926 0.77 -1.3
2,210,752 - 9294 mRNA_926 0.77 -0.7
2,210,848 - 9294 mRNA_926 0.80 -0.4
2,211,008 + 9294 mRNA_926 0.85 0.3
2,211,138 - 9294 mRNA_926 0.89 -0.2
2,211,230 + 0.6
2,211,261 - -1.9
2,211,269 - 0.4
2,211,293 + -0.5
2,211,385 - 0.0
2,211,610 - -0.2
2,211,627 - -0.8
2,211,678 + -0.2
2,211,681 + 0.1
2,211,723 + -2.3
2,211,723 + -0.9
2,211,723 + -0.9
2,211,758 + 1.9
2,211,787 - -1.0
2,211,902 + 9295 mRNA_927 0.11 0.3
2,211,904 - 9295 mRNA_927 0.11 -2.1
2,211,935 + 9295 mRNA_927 0.13 -0.5
2,211,944 + 9295 mRNA_927 0.14 0.2
2,212,030 - 9295 mRNA_927 0.21 -0.8
2,212,032 - 9295 mRNA_927 0.21 -0.3
2,212,035 - 9295 mRNA_927 0.21 0.0
2,212,043 + 9295 mRNA_927 0.22 -0.8
2,212,065 - 9295 mRNA_927 0.24 1.5
2,212,097 + 9295 mRNA_927 0.26 0.7
2,212,200 - 9295 mRNA_927 0.34 -0.2
2,212,205 + 9295 mRNA_927 0.35 0.7
2,212,286 - 9295 mRNA_927 0.41 -0.4
2,212,309 + 9295 mRNA_927 0.43 0.5
2,212,330 + 9295 mRNA_927 0.45 -0.7
2,212,333 - 9295 mRNA_927 0.45 0.2
2,212,333 - 9295 mRNA_927 0.45 -0.5
2,212,365 - 9295 mRNA_927 0.47 -2.3
2,212,368 + 9295 mRNA_927 0.48 0.0
2,212,489 + 9295 mRNA_927 0.57 -0.0
2,212,492 + 9295 mRNA_927 0.57 -0.4
2,212,494 + 9295 mRNA_927 0.57 -1.1