Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_730

Experiments: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_729: 9097 - BLAST CMGC/DYRK/DYRK2 protein kinase [Microbotryum lychnidi..., at 1733800 to 1738518 9097 mRNA_730: 9098 - KOG0061 Transporter, ABC superfamily (Breast cancer resistance protein), at 1738976 to 1743135 9098 mRNA_731: 9099 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 1743450 to 1746549 9099

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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1,737,998 + 9097 mRNA_729 0.89 -0.9
1,738,082 - 1.1
1,738,104 + 0.8
1,738,244 - 0.6
1,738,272 - -0.6
1,738,412 - 2.0
1,738,432 + 0.4
1,738,432 - -0.2
1,738,581 + 1.0
1,738,592 + 1.2
1,738,720 + 1.3
1,738,733 + 1.0
1,738,737 - 0.1
1,738,738 - 0.5
1,738,738 - 1.3
1,738,741 + 0.8
1,738,746 + 0.0
1,738,852 - -0.0
1,738,856 + 1.1
1,738,870 - 0.9
1,739,190 - 0.3
1,739,199 + 1.1
1,739,494 + 9098 mRNA_730 0.12 -0.4
1,739,605 + 9098 mRNA_730 0.15 0.7
1,739,863 - 9098 mRNA_730 0.21 2.0
1,739,883 - 9098 mRNA_730 0.22 1.4
1,740,035 - 9098 mRNA_730 0.25 0.2
1,740,293 + 9098 mRNA_730 0.32 2.1
1,740,455 - 9098 mRNA_730 0.36 0.4
1,740,596 + 9098 mRNA_730 0.39 -0.1
1,740,740 - 9098 mRNA_730 0.42 0.2
1,740,785 - 9098 mRNA_730 0.43 2.0
1,740,836 + 9098 mRNA_730 0.45 1.5
1,740,920 - 9098 mRNA_730 0.47 0.5
1,740,939 - 9098 mRNA_730 0.47 -0.3
1,741,365 - 9098 mRNA_730 0.57 -1.5
1,741,374 + 9098 mRNA_730 0.58 1.0
1,741,465 + 9098 mRNA_730 0.60 0.5
1,741,565 - 9098 mRNA_730 0.62 -0.3
1,741,694 - 9098 mRNA_730 0.65 0.8
1,742,093 + 9098 mRNA_730 0.75 0.7
1,742,197 - 9098 mRNA_730 0.77 0.3
1,742,197 - 9098 mRNA_730 0.77 0.3
1,742,536 + 9098 mRNA_730 0.86 0.1
1,742,947 + 0.5
1,742,985 - 0.6
1,743,087 + 0.1
1,743,101 + -0.0
1,743,137 + 0.9
1,743,221 - 1.2
1,743,229 - 1.2
1,743,239 + 0.7
1,743,241 + 1.2
1,743,250 - -0.6
1,743,259 + 0.2
1,743,259 + 0.3
1,743,261 - 1.1
1,743,558 - 2.3
1,743,697 + 0.5
1,743,699 - -0.1
1,744,126 - 9099 mRNA_731 0.22 0.9