Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_718

Experiments: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_717: 9085 - K00058 serA, PHGDH D-3-phosphoglycerate dehydrogenase, at 1712409 to 1714095 9085 mRNA_718: 9086 - KOG2776 Metallopeptidase, at 1714383 to 1716364 9086 mRNA_719: 9087 - HMMPfam-Protein of unknown function (DUF3074)-PF11274, at 1716793 to 1718081 9087

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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1,714,067 + -0.1
1,714,189 + -0.4
1,714,202 + 1.2
1,714,216 - 2.8
1,714,216 + -0.0
1,714,228 + -0.3
1,714,247 - -1.3
1,714,254 + -1.1
1,714,263 - 1.0
1,714,505 - -0.1
1,714,513 - 1.4
1,714,652 - 9086 mRNA_718 0.14 -0.6
1,714,666 + 9086 mRNA_718 0.14 0.5
1,715,254 - 9086 mRNA_718 0.44 0.8
1,715,545 + 9086 mRNA_718 0.59 -0.9
1,715,652 + 9086 mRNA_718 0.64 1.4
1,716,240 + -1.2
1,716,264 + 1.2
1,716,296 + -1.7
1,716,300 - -1.4
1,716,404 + 0.4
1,716,409 - -0.0
1,716,417 - -1.2
1,716,421 + 0.1
1,716,426 - 0.0
1,716,431 + -0.4
1,716,434 - -0.5
1,716,436 + 0.2
1,716,438 + 0.2
1,716,632 + 0.2
1,716,655 - 0.5
1,716,665 - 0.4
1,716,666 + -0.3
1,716,666 + 0.6
1,716,668 - 1.6
1,716,675 + -1.0
1,716,675 - 1.2
1,716,679 + -0.1
1,716,687 + 0.4
1,716,687 + 1.0
1,716,688 + -0.1
1,716,689 - 0.4
1,716,822 + -0.8
1,716,824 - -1.2
1,716,985 - 9087 mRNA_719 0.15 1.8
1,716,986 - 9087 mRNA_719 0.15 -0.6
1,716,988 - 9087 mRNA_719 0.15 -1.1
1,716,990 + 9087 mRNA_719 0.15 -0.2
1,716,994 + 9087 mRNA_719 0.16 -0.3
1,717,258 + 9087 mRNA_719 0.36 0.2
1,717,270 + 9087 mRNA_719 0.37 1.7