Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_523

Experiments: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_522: 8890 - K13026 DHX57 ATP-dependent RNA helicase DHX57, at 1238854 to 1244185 8890 mRNA_523: 8891 - K11644 SIN3A paired amphipathic helix protein Sin3a, at 1244383 to 1249643 8891 mRNA_524: 8892 - KOG0519 Sensory transduction histidine kinase, at 1249927 to 1253514 8892

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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1,244,016 + 0.9
1,244,024 - 0.6
1,244,140 + 0.0
1,244,159 - 1.6
1,244,159 - -0.6
1,244,289 + 0.4
1,244,317 + 0.6
1,247,440 + 8891 mRNA_523 0.58 2.5
1,247,605 - 8891 mRNA_523 0.61 0.8
1,248,731 - 8891 mRNA_523 0.83 1.2
1,249,220 + 0.8
1,249,497 - 0.4
1,249,520 + -0.1
1,249,735 + 1.5
1,249,746 - -0.4
1,249,762 + 0.7
1,249,774 - -1.4
1,249,965 + -0.4
1,249,973 + 0.2
1,250,098 - 0.2
1,250,111 + -0.5
1,250,251 + 0.8
1,250,267 - -1.2
1,250,294 - 8892 mRNA_524 0.10 1.9
1,250,301 + 8892 mRNA_524 0.10 0.1
1,250,308 + 8892 mRNA_524 0.11 -2.2