Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_440

Experiments: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_439: 8807 - KOG2246 Galactosyltransferases, at 1016964 to 1019320 8807 mRNA_440: 8808 - HMMPfam-G protein-coupled glucose receptor regulating Gpa2-PF11710,SUPERFAMILY--SSF81321, at 1020213 to 1022062 8808 mRNA_441: 8809 - K13989 DERL2_3 Derlin-2/3, at 1022824 to 1024299 8809

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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1,019,318 - -0.2
1,019,320 - 2.5
1,019,347 + -0.0
1,019,347 - -0.2
1,019,352 + 1.5
1,019,371 - -0.1
1,019,391 - 0.3
1,019,455 - 0.4
1,019,488 - 1.2
1,019,492 + 0.4
1,019,496 + -0.1
1,019,497 + -0.2
1,019,502 + 1.0
1,019,518 + 0.2
1,019,632 - -0.5
1,019,634 + -0.4
1,019,636 + -0.4
1,019,643 + -0.0
1,019,662 + -0.1
1,019,686 + 1.1
1,019,700 + -0.3
1,019,711 + 0.6
1,019,729 - 1.8
1,019,729 - 0.6
1,019,731 + 0.2
1,019,735 + -0.6
1,019,736 + 0.8
1,019,743 - 1.5
1,019,766 - 0.3
1,019,778 + 2.4
1,019,881 + 1.7
1,019,886 + -1.1
1,019,891 - 0.2
1,019,900 + 1.9
1,019,907 - 0.3
1,019,907 + 0.8
1,019,909 + 0.2
1,019,981 - -0.8
1,019,982 + 1.0
1,019,982 + 0.1
1,019,982 + 1.2
1,020,071 - 0.8
1,020,097 + 1.1
1,020,242 - -1.1
1,020,258 + -0.3
1,020,530 + 8808 mRNA_440 0.17 0.7
1,020,551 + 8808 mRNA_440 0.18 1.1
1,020,957 + 8808 mRNA_440 0.40 -0.4
1,021,065 - 8808 mRNA_440 0.46 0.0
1,021,671 + 8808 mRNA_440 0.79 1.7
1,021,711 - 8808 mRNA_440 0.81 1.0
1,021,860 + 8808 mRNA_440 0.89 1.5
1,022,103 - 0.3
1,022,128 + -0.9
1,022,131 + 1.2
1,022,142 + 1.0
1,022,268 - 0.2
1,022,274 - 0.3
1,022,287 - -0.4
1,022,297 - 0.8
1,022,335 + 0.3
1,022,336 + 0.1
1,022,337 + 2.6
1,022,341 + 0.1
1,022,347 + 0.3
1,022,358 + 0.4
1,022,402 - 0.1
1,022,410 + -0.1
1,022,422 + 2.3
1,022,430 + 0.9
1,022,431 - 1.0
1,022,471 - -0.5
1,022,475 - 0.4
1,022,766 - 0.2
1,022,909 - -0.4