Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_401

Experiments: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_400: 8768 - K00728 POMT dolichyl-phosphate-mannose-protein mannosyltransferase, at 930496 to 933710 8768 mRNA_401: 8769 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 934317 to 936010 8769 mRNA_402: 8770 - BLAST N-terminal acetyltransferase catalytic subunit Nat1 [..., at 936053 to 937253 8770

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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933,604 - 0.1
933,650 - 0.7
934,046 - 1.4
934,195 + 0.3
934,239 - -0.0
934,255 + -1.1
934,364 - -1.0
934,374 + -0.7
934,380 - -0.5
934,384 + -0.2
934,502 - 8769 mRNA_401 0.11 0.5
934,530 + 8769 mRNA_401 0.13 0.9
934,539 - 8769 mRNA_401 0.13 1.3
934,545 - 8769 mRNA_401 0.13 3.1
935,384 + 8769 mRNA_401 0.63 1.5
935,386 - 8769 mRNA_401 0.63 0.7
935,797 - 8769 mRNA_401 0.87 0.4
935,835 + 8769 mRNA_401 0.90 0.0
935,932 + 0.9
935,956 - 0.1
935,995 - -1.2
936,009 - 0.2
936,011 + 0.4
936,017 - -2.9
936,018 + 0.2
936,047 + -0.3
936,055 + 0.0
936,083 - -0.7
936,084 + -1.0
936,091 - 1.4
936,091 - -2.6
936,092 + -0.1
936,101 + -0.3
936,103 - 0.8
936,106 - 2.2
936,111 + -0.2
936,122 - 0.3
936,123 - -0.7
936,130 - -1.1
936,134 - 0.5
936,135 - -0.6
936,138 + 0.2
936,138 + 2.9
936,152 - -1.0
936,195 + 8770 mRNA_402 0.12 -0.3
936,206 + 8770 mRNA_402 0.13 -0.3
936,209 - 8770 mRNA_402 0.13 1.2
936,211 + 8770 mRNA_402 0.13 0.9
936,213 + 8770 mRNA_402 0.13 0.7
936,235 + 8770 mRNA_402 0.15 0.5
936,242 - 8770 mRNA_402 0.16 1.6
936,254 - 8770 mRNA_402 0.17 -1.0
936,254 - 8770 mRNA_402 0.17 -0.0
936,259 - 8770 mRNA_402 0.17 0.1
936,277 - 8770 mRNA_402 0.19 0.6
936,293 - 8770 mRNA_402 0.20 0.6
936,309 - 8770 mRNA_402 0.21 -0.3
936,310 + 8770 mRNA_402 0.21 0.2
936,311 + 8770 mRNA_402 0.21 -0.9
936,312 - 8770 mRNA_402 0.22 0.2
936,320 + 8770 mRNA_402 0.22 -0.1
936,325 - 8770 mRNA_402 0.23 -0.4
936,330 - 8770 mRNA_402 0.23 0.0
936,331 - 8770 mRNA_402 0.23 0.2
936,332 - 8770 mRNA_402 0.23 0.5
936,343 - 8770 mRNA_402 0.24 0.0
936,349 - 8770 mRNA_402 0.25 0.0
936,368 + 8770 mRNA_402 0.26 0.0
936,380 - 8770 mRNA_402 0.27 0.7
936,381 - 8770 mRNA_402 0.27 0.5
936,381 - 8770 mRNA_402 0.27 -0.6
936,384 + 8770 mRNA_402 0.28 -0.1
936,385 + 8770 mRNA_402 0.28 0.8
936,396 + 8770 mRNA_402 0.29 -0.8
936,396 - 8770 mRNA_402 0.29 -0.1
936,429 - 8770 mRNA_402 0.31 1.9
936,477 - 8770 mRNA_402 0.35 1.6
936,512 + 8770 mRNA_402 0.38 1.3
936,539 + 8770 mRNA_402 0.40 0.7
936,542 + 8770 mRNA_402 0.41 -0.1
936,545 + 8770 mRNA_402 0.41 1.9
936,550 + 8770 mRNA_402 0.41 0.6
936,567 - 8770 mRNA_402 0.43 1.8
936,578 + 8770 mRNA_402 0.44 -0.1
936,615 + 8770 mRNA_402 0.47 0.5
936,633 + 8770 mRNA_402 0.48 -0.9
936,645 - 8770 mRNA_402 0.49 -2.1
936,649 - 8770 mRNA_402 0.50 0.5
936,652 - 8770 mRNA_402 0.50 0.4
936,664 + 8770 mRNA_402 0.51 0.2
936,664 + 8770 mRNA_402 0.51 0.2
936,669 + 8770 mRNA_402 0.51 -0.8
936,683 - 8770 mRNA_402 0.52 0.5
936,683 - 8770 mRNA_402 0.52 0.8
936,703 - 8770 mRNA_402 0.54 -1.8
936,712 - 8770 mRNA_402 0.55 -0.3
936,743 - 8770 mRNA_402 0.57 0.7
936,750 - 8770 mRNA_402 0.58 0.5
936,750 - 8770 mRNA_402 0.58 -0.1
936,772 + 8770 mRNA_402 0.60 -0.0
936,774 - 8770 mRNA_402 0.60 0.1
936,775 + 8770 mRNA_402 0.60 -0.2
936,781 + 8770 mRNA_402 0.61 1.1
936,790 + 8770 mRNA_402 0.61 1.2
936,791 - 8770 mRNA_402 0.61 0.3
936,793 - 8770 mRNA_402 0.62 0.5
936,801 - 8770 mRNA_402 0.62 1.9
936,809 - 8770 mRNA_402 0.63 1.1
936,813 - 8770 mRNA_402 0.63 -0.3
936,817 - 8770 mRNA_402 0.64 0.8
936,827 - 8770 mRNA_402 0.64 1.3
936,829 + 8770 mRNA_402 0.65 -0.5
936,830 - 8770 mRNA_402 0.65 0.1
936,832 - 8770 mRNA_402 0.65 0.8
936,837 + 8770 mRNA_402 0.65 -0.5
936,887 - 8770 mRNA_402 0.69 0.9