Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_144

Experiments: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_143: 8511 - KOG4136 Predicted mitochondrial cholesterol transporter, at 356168 to 357922 8511 mRNA_144: 8512 - K00698 CHS1 chitin synthase, at 358360 to 365387 8512 mRNA_145: 8513 - KOG3299 Uncharacterized conserved protein, at 365672 to 367146 8513

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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357,702 + 8511 mRNA_143 0.87 -0.1
357,818 - -0.4
357,821 - -0.0
357,848 - 1.7
357,851 - -0.1
357,968 + 0.4
357,976 + -0.6
357,977 - 2.2
357,987 - 0.2
357,987 + -0.6
357,994 + -0.3
357,997 - 1.9
358,000 - -1.3
358,000 - -0.1
358,005 - 1.2
358,005 - 0.7
358,006 - -0.5
358,006 + -0.1
358,079 - 0.1
358,123 - 1.3
358,126 - -0.6
358,131 - -0.7
358,133 - 0.7
358,133 - 0.5
358,134 - -0.2
358,141 + -0.6
358,151 + 0.8
358,156 + -1.9
358,157 + 0.0
358,157 + 1.1
358,161 + 0.7
358,254 + 0.2
358,281 - 0.0
358,290 - -0.6
358,314 + 1.2
358,432 - -1.3
358,470 - 0.2
358,513 + -1.0
358,604 - 1.2
358,609 + -0.2
358,627 - 0.1
358,640 + 1.4
358,789 + -0.5
359,212 + 8512 mRNA_144 0.12 0.4
359,509 - 8512 mRNA_144 0.16 0.5
359,921 - 8512 mRNA_144 0.22 0.0
360,046 - 8512 mRNA_144 0.24 -1.7
360,355 + 8512 mRNA_144 0.28 -2.3
360,470 - 8512 mRNA_144 0.30 2.1
360,491 + 8512 mRNA_144 0.30 0.2
360,492 - 8512 mRNA_144 0.30 -0.1
360,657 - 8512 mRNA_144 0.33 -0.6
361,622 + 8512 mRNA_144 0.46 -0.7
361,839 - 8512 mRNA_144 0.50 0.6
361,956 + 8512 mRNA_144 0.51 0.9
361,962 + 8512 mRNA_144 0.51 -0.7
362,349 + 8512 mRNA_144 0.57 0.5
362,496 - 8512 mRNA_144 0.59 0.2
362,591 - 8512 mRNA_144 0.60 -0.4
362,625 + 8512 mRNA_144 0.61 1.3
362,930 - 8512 mRNA_144 0.65 -1.5
362,989 - 8512 mRNA_144 0.66 -0.8
362,990 - 8512 mRNA_144 0.66 -0.0
363,040 - 8512 mRNA_144 0.67 0.4
363,099 - 8512 mRNA_144 0.67 0.1
363,249 - 8512 mRNA_144 0.70 -0.4
363,970 + 8512 mRNA_144 0.80 0.1
364,014 + 8512 mRNA_144 0.80 0.9
364,443 + 8512 mRNA_144 0.87 -1.6
364,446 + 8512 mRNA_144 0.87 -1.2
364,591 + 8512 mRNA_144 0.89 0.3
364,603 + 8512 mRNA_144 0.89 0.2
365,192 + -0.9
365,197 + -0.5
365,314 + 0.8
365,440 + -0.9
365,465 - 1.4
365,472 - 0.4
365,517 + 0.2
365,617 + 1.0
365,631 + -0.8
365,759 - -0.2
365,759 - 1.5
365,766 + 1.4