Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_142

Experiments: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_141: 8509 - Hypothetical Protein, at 339978 to 342089 8509 mRNA_142: 8510 - HMMPfam-Protein of unknown function (DUF3712)-PF12505, at 343005 to 355699 8510 mRNA_143: 8511 - KOG4136 Predicted mitochondrial cholesterol transporter, at 356168 to 357922 8511

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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342,072 + 0.4
342,127 + 0.4
342,129 + -0.5
342,131 - -0.3
342,144 + 0.2
342,149 - -0.2
342,167 + 0.6
342,171 - 0.8
342,177 + 0.2
342,187 - 0.3
342,220 - -0.3
342,230 - 0.6
342,230 - 0.8
342,248 - 0.5
342,249 + -0.1
342,250 - -1.4
342,250 + -0.1
342,274 + 1.5
342,293 - 1.2
342,309 - -1.4
342,313 + -0.3
342,317 - 0.5
342,326 - 2.7
342,328 - 0.1
342,328 - 2.4
342,330 - 0.7
342,337 - 0.7
342,342 + -0.4
342,344 + -0.8
342,344 + 0.4
342,353 + 0.6
342,476 + 0.9
342,477 + 0.1
342,487 + 0.6
342,488 - 1.8
342,491 - 0.1
342,493 - 0.5
342,550 - 0.3
342,591 - -0.4
342,611 - 0.6
342,619 - -0.3
342,620 + -0.4
342,626 + -0.4
342,639 - -0.2
342,652 + 0.1
342,742 - 0.4
342,750 - 0.7
342,759 - -0.2
342,761 + 1.3
342,762 + 0.1
342,791 - 1.3
342,793 + -1.6
342,808 - 0.1
342,811 + -1.4
342,884 - 2.7
342,951 + 0.3
342,996 - -0.5
343,129 - -0.3
343,132 - -1.0
343,136 + 0.2
343,148 - -0.4
343,184 - 1.0
343,473 + -0.2
344,027 - 0.9
344,199 - -0.4
344,524 - 8510 mRNA_142 0.12 1.5
344,617 + 8510 mRNA_142 0.13 -0.4
344,632 - 8510 mRNA_142 0.13 -1.0
344,680 + 8510 mRNA_142 0.13 1.1
344,966 + 8510 mRNA_142 0.15 0.2
345,239 - 8510 mRNA_142 0.18 -0.3
345,394 + 8510 mRNA_142 0.19 0.7
345,419 - 8510 mRNA_142 0.19 1.2
345,458 + 8510 mRNA_142 0.19 1.5
345,527 - 8510 mRNA_142 0.20 -0.6
345,687 + 8510 mRNA_142 0.21 0.9
345,741 - 8510 mRNA_142 0.22 1.5
345,764 + 8510 mRNA_142 0.22 -0.9
345,784 + 8510 mRNA_142 0.22 -0.6
346,252 - 8510 mRNA_142 0.26 -0.6
346,292 + 8510 mRNA_142 0.26 -0.2
346,445 - 8510 mRNA_142 0.27 -0.6
346,527 - 8510 mRNA_142 0.28 1.5
346,605 + 8510 mRNA_142 0.28 0.5
346,649 + 8510 mRNA_142 0.29 -0.2
346,705 - 8510 mRNA_142 0.29 1.3
346,746 + 8510 mRNA_142 0.29 -0.7
347,055 - 8510 mRNA_142 0.32 0.2
347,061 - 8510 mRNA_142 0.32 -0.2
347,068 - 8510 mRNA_142 0.32 0.4
347,074 + 8510 mRNA_142 0.32 0.9
347,166 - 8510 mRNA_142 0.33 1.6
347,192 + 8510 mRNA_142 0.33 -1.3
347,193 + 8510 mRNA_142 0.33 -1.0
347,272 - 8510 mRNA_142 0.34 0.5
347,592 - 8510 mRNA_142 0.36 1.5
347,635 - 8510 mRNA_142 0.36 -0.2
347,645 + 8510 mRNA_142 0.37 0.9
347,661 - 8510 mRNA_142 0.37 0.4
347,669 + 8510 mRNA_142 0.37 0.8
347,788 + 8510 mRNA_142 0.38 0.6
348,162 + 8510 mRNA_142 0.41 0.4
348,195 - 8510 mRNA_142 0.41 0.4
348,328 + 8510 mRNA_142 0.42 0.4
348,450 + 8510 mRNA_142 0.43 -0.1
348,591 - 8510 mRNA_142 0.44 -1.8
348,591 - 8510 mRNA_142 0.44 -1.4
348,724 - 8510 mRNA_142 0.45 2.0
348,744 + 8510 mRNA_142 0.45 1.1
348,820 + 8510 mRNA_142 0.46 1.6
348,888 - 8510 mRNA_142 0.46 0.1
348,903 - 8510 mRNA_142 0.46 -0.3
348,954 - 8510 mRNA_142 0.47 1.2
349,039 - 8510 mRNA_142 0.48 0.2
349,057 + 8510 mRNA_142 0.48 0.6
349,099 + 8510 mRNA_142 0.48 1.1
349,383 - 8510 mRNA_142 0.50 -1.3
349,439 - 8510 mRNA_142 0.51 -0.3
349,458 + 8510 mRNA_142 0.51 0.9
349,528 + 8510 mRNA_142 0.51 -0.9
349,848 - 8510 mRNA_142 0.54 -0.1
349,878 - 8510 mRNA_142 0.54 -0.4
349,932 - 8510 mRNA_142 0.55 -2.1
349,936 - 8510 mRNA_142 0.55 0.4
350,006 - 8510 mRNA_142 0.55 0.9
350,023 + 8510 mRNA_142 0.55 -0.1
350,107 - 8510 mRNA_142 0.56 -1.3
350,148 - 8510 mRNA_142 0.56 1.1
350,205 - 8510 mRNA_142 0.57 0.1
350,239 - 8510 mRNA_142 0.57 0.9
350,350 - 8510 mRNA_142 0.58 0.4
350,384 + 8510 mRNA_142 0.58 1.4
350,414 - 8510 mRNA_142 0.58 2.8
350,501 - 8510 mRNA_142 0.59 0.1
350,618 + 8510 mRNA_142 0.60 -0.3
350,654 - 8510 mRNA_142 0.60 -0.9
350,656 + 8510 mRNA_142 0.60 0.9
350,731 + 8510 mRNA_142 0.61 -1.9
350,751 - 8510 mRNA_142 0.61 -0.6
350,778 - 8510 mRNA_142 0.61 0.7
350,818 - 8510 mRNA_142 0.62 0.7
351,055 + 8510 mRNA_142 0.63 1.0
351,081 - 8510 mRNA_142 0.64 1.7
351,224 - 8510 mRNA_142 0.65 -0.2
351,247 + 8510 mRNA_142 0.65 -1.4
351,295 + 8510 mRNA_142 0.65 -1.0
351,316 + 8510 mRNA_142 0.65 -0.2
351,346 - 8510 mRNA_142 0.66 2.2
351,454 - 8510 mRNA_142 0.67 -0.5
351,516 + 8510 mRNA_142 0.67 0.3
351,574 - 8510 mRNA_142 0.67 1.3
351,584 - 8510 mRNA_142 0.68 -0.6
351,604 + 8510 mRNA_142 0.68 -0.5
351,640 - 8510 mRNA_142 0.68 -0.1
351,660 + 8510 mRNA_142 0.68 2.7
351,725 + 8510 mRNA_142 0.69 0.8
351,755 - 8510 mRNA_142 0.69 -0.6
351,796 - 8510 mRNA_142 0.69 -0.9
351,802 + 8510 mRNA_142 0.69 -1.1
351,990 - 8510 mRNA_142 0.71 1.1
352,000 - 8510 mRNA_142 0.71 1.7
352,021 - 8510 mRNA_142 0.71 -1.5
352,098 - 8510 mRNA_142 0.72 1.8
352,103 + 8510 mRNA_142 0.72 1.0
352,106 + 8510 mRNA_142 0.72 -0.7
352,120 + 8510 mRNA_142 0.72 -1.7
352,153 - 8510 mRNA_142 0.72 -1.7
352,299 - 8510 mRNA_142 0.73 0.8
352,306 + 8510 mRNA_142 0.73 0.6
352,315 + 8510 mRNA_142 0.73 -0.3
352,557 - 8510 mRNA_142 0.75 0.8
352,593 - 8510 mRNA_142 0.76 -0.2
352,593 - 8510 mRNA_142 0.76 0.5
352,809 + 8510 mRNA_142 0.77 -0.8
352,867 + 8510 mRNA_142 0.78 1.1
352,913 - 8510 mRNA_142 0.78 1.4
352,917 + 8510 mRNA_142 0.78 0.8
353,043 - 8510 mRNA_142 0.79 -0.1
353,115 - 8510 mRNA_142 0.80 -0.0
353,198 + 8510 mRNA_142 0.80 -0.7
353,310 - 8510 mRNA_142 0.81 2.1
353,375 + 8510 mRNA_142 0.82 -0.0
353,607 + 8510 mRNA_142 0.84 0.4
353,613 - 8510 mRNA_142 0.84 0.2
353,705 + 8510 mRNA_142 0.84 -0.5
353,845 - 8510 mRNA_142 0.85 1.0
353,855 + 8510 mRNA_142 0.85 0.9
353,893 - 8510 mRNA_142 0.86 -0.5
353,895 + 8510 mRNA_142 0.86 -0.8
353,899 + 8510 mRNA_142 0.86 0.6
353,949 - 8510 mRNA_142 0.86 2.9
354,024 + 8510 mRNA_142 0.87 0.7
354,039 - 8510 mRNA_142 0.87 0.6
354,076 - 8510 mRNA_142 0.87 0.5
354,146 + 8510 mRNA_142 0.88 0.7
354,172 + 8510 mRNA_142 0.88 -1.0
354,186 - 8510 mRNA_142 0.88 1.9
354,222 - 8510 mRNA_142 0.88 0.2
354,230 + 8510 mRNA_142 0.88 0.0
354,482 + 0.3
354,653 - 0.8
354,729 - 0.9
355,099 - 0.3
355,161 - -0.5
355,374 - -1.4
355,403 - -0.1
355,418 - 1.6
355,442 - 2.0
355,531 + 0.7
355,647 + -1.1
355,755 - 1.1
355,785 + 0.7
355,804 + 0.5
356,035 + 0.7
356,179 - 0.6
356,187 - 0.3
356,537 - 8511 mRNA_143 0.21 0.3
356,609 - 8511 mRNA_143 0.25 1.2
356,663 + 8511 mRNA_143 0.28 0.2
356,682 + 8511 mRNA_143 0.29 -1.4