Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_124

Experiments: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_122: 8490 - HMMPfam-Rare lipoprotein A (RlpA)-like double-psi beta-barrel-PF03330,SUPERFAMILY--SSF50685, at 296451 to 297684 8490 mRNA_123: 8491 - Hypothetical Protein, at 297739 to 298245 8491 mRNA_124: 8492 - HMMPfam-Trehalose utilisation-PF06283,SUPERFAMILY--SSF52317, at 298374 to 299465 8492 mRNA_125: 8493 - HMMPfam-Alpha/beta hydrolase family-PF12695,SUPERFAMILY--SSF53474, at 299830 to 300571 8493

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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297,757 - 0.4
297,769 + 1.7
297,812 - 8491 mRNA_123 0.14 1.2
297,840 - 8491 mRNA_123 0.20 -0.4
297,841 + 8491 mRNA_123 0.20 -1.2
297,945 + 8491 mRNA_123 0.41 0.8
297,960 + 8491 mRNA_123 0.44 0.1
297,983 + 8491 mRNA_123 0.48 -0.7
297,983 + 8491 mRNA_123 0.48 -0.7
297,998 - 8491 mRNA_123 0.51 -1.0
298,005 - 8491 mRNA_123 0.52 0.6
298,142 - 8491 mRNA_123 0.79 0.3
298,194 + 8491 mRNA_123 0.90 1.1
298,203 + 0.1
298,225 + -0.6
298,233 + 0.8
298,241 + 0.2
298,335 - 0.3
298,356 + 1.4
298,791 - 8492 mRNA_124 0.38 0.6
298,884 - 8492 mRNA_124 0.47 -0.8
298,891 + 8492 mRNA_124 0.47 0.7
299,205 - 8492 mRNA_124 0.76 0.5
299,216 + 8492 mRNA_124 0.77 0.1
299,617 - 1.7
299,645 - 3.0
299,652 + -1.2
300,229 + 8493 mRNA_125 0.54 0.4