Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_88

Experiments: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_87: 8455 - BLAST HAP1, N-terminal [Xanthophyllomyces dendrorhous], at 207025 to 210193 8455 mRNA_88: 8456 - K17361 ACOT9 acyl-coenzyme A thioesterase 9, at 210659 to 212272 8456

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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209,692 - 8455 mRNA_87 0.84 0.6
209,713 + 8455 mRNA_87 0.85 0.8
209,740 - 8455 mRNA_87 0.86 -2.1
209,807 + 8455 mRNA_87 0.88 -0.8
209,891 + -0.4
210,158 - -0.1
210,162 + 1.5
210,167 - -0.7
210,173 - 0.4
210,176 + 0.7
210,179 - 3.1
210,179 - 0.6
210,307 + 0.5
210,320 - 0.3
210,321 - -1.4
210,337 + 1.3
210,345 + 1.6
210,368 - -0.3
210,399 - 1.5
210,407 - -1.6
210,418 + -1.1
210,431 + -0.4
210,439 - 0.7
210,449 - 0.8
210,453 - -0.8
210,460 - -0.3
210,476 - 0.4
210,487 + 1.0
210,546 - 0.1
210,568 + -1.1
210,579 + 0.1
210,593 - 1.1
210,600 + 0.5
210,603 - -1.2
210,604 + -0.9
210,610 - 0.4
210,628 + 0.3
210,630 + -1.1
210,637 + -2.4
210,639 - -0.7
210,639 + 1.5
210,645 + -0.5
210,654 - 1.7
210,662 + 0.8
210,663 + -1.2
210,672 + -1.2
210,684 - 0.9
210,772 + -0.4
210,794 + 0.4
210,797 - 0.1
211,078 + 8456 mRNA_88 0.26 -1.1
211,503 + 8456 mRNA_88 0.52 -0.7
211,523 + 8456 mRNA_88 0.54 2.2
211,771 - 8456 mRNA_88 0.69 0.3
211,778 + 8456 mRNA_88 0.69 0.8
212,220 + -1.4
212,226 + 2.4
212,375 - -0.2
212,410 - 0.3
212,494 + 0.3
212,502 - 1.0
212,504 - 0.5
212,508 + 0.1
212,512 - -0.4
212,524 + -0.0
212,544 - 1.0
212,623 + -0.4
212,623 + 0.0
212,641 + 0.4
212,645 + 0.5
212,652 + 0.4
212,652 - 0.4
212,658 + 0.3
212,663 - 1.5
212,669 + 0.5
212,670 - 0.7
212,677 - 1.0
212,695 - 1.1
212,695 + 0.5
212,801 - 0.5
212,807 + 1.5
212,811 + -0.6
212,821 + -1.5
212,835 - 0.7
212,844 - -0.6
212,853 + 1.4
212,855 + -0.3
212,873 + -0.8
212,875 - -0.2
212,880 + 2.1
212,880 + 0.2
212,900 - -2.7
212,901 - 0.5
212,906 - -0.2
212,933 - 0.4
212,940 - 3.6
212,950 - -1.3
212,961 - 0.4
212,983 + -0.1
213,005 - 1.4
213,025 - -0.2
213,029 + -0.1
213,039 - 0.5
213,043 + 0.0
213,053 + -1.0
213,059 - 1.6
213,066 - 1.0
213,067 + 1.0
213,073 + -0.3
213,074 + 0.1
213,099 + -0.3
213,110 - 1.7
213,112 + 1.1
213,118 + 0.7
213,122 + 0.9
213,125 - 1.7
213,126 + 0.8
213,126 + -0.5
213,127 - 0.3
213,139 + 0.3
213,141 - 2.0
213,156 + 0.5
213,158 + 0.2
213,159 + -1.1
213,165 - -2.5
213,168 - -1.4
213,175 - -1.2