Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1

Experiments: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1: 8369 - K12198 CHMP5, VPS60 charged multivesicular body protein 5, at 1571 to 2453 8369 mRNA_2: 8370 - PRINTS-Proline rich extensin signature-PR01217, at 3233 to 7809 8370

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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595 + -0.7
609 - -0.4
637 - 0.5
651 + 0.4
654 + 0.1
659 - 0.3
663 + 1.0
672 - 1.4
673 + 0.1
685 + -1.4
725 + 2.3
790 - 0.4
791 + -0.2
798 + -1.4
798 + -0.7
804 - -2.0
821 + 2.0
860 + -0.4
899 - -2.0
916 + 1.7
939 + -0.4
957 + -0.2
975 - 1.7
976 + 0.6
996 - 0.4
1,005 + 0.5
1,005 - 0.4
1,007 - 0.5
1,052 + -1.3
1,058 + 2.1
1,070 + 0.8
1,113 - 0.4
1,115 - 2.1
1,117 + -0.4
1,207 + 0.4
1,257 + -0.8
1,285 - -2.0
1,359 - 0.1
1,422 + 0.7
1,960 + 8369 mRNA_1 0.44 -1.9
2,268 + 8369 mRNA_1 0.79 0.5
2,361 - 8369 mRNA_1 0.89 -2.1
2,441 + -1.1
2,550 + -0.3
2,552 - -0.7
2,564 + -0.3
2,701 + -0.7
2,839 - 0.8
2,853 + -0.8
2,946 - -1.5
3,005 - -0.3
3,125 - -0.5
3,136 + 0.5