Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8484

Experiments: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8483: 16851 - BLAST GA28568 gene product from transcript GA28568-RA [Rhiz..., at 1332455 to 1336946 16851 mRNA_8484: 16852 - KOG0725 Reductases with broad range of substrate specificities, at 1337169 to 1338536 16852 mRNA_8485: 16853 - K12946 SPCS1 signal peptidase complex subunit 1, at 1338760 to 1339317 16853 mRNA_8486: 16854 - KOG1162 Predicted small molecule transporter, at 1339476 to 1341474 16854

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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1,336,285 - 16851 mRNA_8483 0.85 0.0
1,336,305 + 16851 mRNA_8483 0.86 1.5
1,336,308 + 16851 mRNA_8483 0.86 0.1
1,336,431 - 16851 mRNA_8483 0.89 0.9
1,336,438 - 16851 mRNA_8483 0.89 -1.3
1,336,446 + 16851 mRNA_8483 0.89 0.9
1,336,523 - 0.7
1,336,527 + 0.7
1,336,738 - 0.2
1,336,999 + 0.9
1,336,999 + 0.3
1,337,004 - -0.4
1,337,028 + -0.8
1,337,075 - 0.1
1,337,081 - -0.3
1,337,088 + 3.7
1,337,134 + 0.3
1,337,153 + -0.6
1,337,245 - -1.0
1,337,266 + -1.1
1,337,269 + -0.0
1,337,269 + -0.3
1,337,291 - 1.6
1,337,352 - 16852 mRNA_8484 0.13 -1.0
1,337,361 + 16852 mRNA_8484 0.14 1.0
1,337,416 - 16852 mRNA_8484 0.18 -0.1
1,337,475 + 16852 mRNA_8484 0.22 0.8
1,337,613 + 16852 mRNA_8484 0.32 1.1
1,337,860 - 16852 mRNA_8484 0.51 -0.8
1,337,861 + 16852 mRNA_8484 0.51 1.4
1,337,987 + 16852 mRNA_8484 0.60 0.4
1,338,251 + 16852 mRNA_8484 0.79 0.2
1,338,257 - 16852 mRNA_8484 0.80 1.2
1,338,352 + 16852 mRNA_8484 0.86 0.7
1,338,419 - -0.1
1,338,429 - -0.3
1,338,597 + 0.7
1,338,605 + 3.6
1,338,714 + -1.9
1,338,725 - 1.2
1,338,725 - 0.2
1,338,734 - 0.5
1,338,750 - -0.4
1,338,752 + -0.7
1,338,755 - -0.2
1,338,755 + 0.0
1,338,864 + 16853 mRNA_8485 0.19 -0.2
1,338,873 + 16853 mRNA_8485 0.20 0.9
1,338,885 - 16853 mRNA_8485 0.22 -0.1
1,338,887 + 16853 mRNA_8485 0.23 0.5
1,338,977 - 16853 mRNA_8485 0.39 -0.1
1,339,037 + 16853 mRNA_8485 0.50 0.7
1,339,291 - -0.8
1,339,325 + 1.2
1,339,463 + -0.1
1,339,484 + 0.2
1,339,532 - 0.5