Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8445

Experiments: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8444: 16812 - HMMPfam-HPP family-PF04982, at 1245656 to 1246720 16812 mRNA_8445: 16813 - KOG0691 Molecular chaperone (DnaJ superfamily), at 1247628 to 1249851 16813 mRNA_8446: 16814 - K01115 PLD1_2 phospholipase D1/2, at 1250105 to 1254255 16814

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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1,246,645 - 0.4
1,246,652 + -0.0
1,246,654 + 0.6
1,246,792 + -0.6
1,246,792 + 0.3
1,246,810 - -0.8
1,246,833 + -0.4
1,246,840 + 0.1
1,246,841 + -0.4
1,246,849 + -0.5
1,246,861 + 0.1
1,246,867 - 2.1
1,246,953 - 0.1
1,247,005 + -0.4
1,247,267 + 2.4
1,247,281 - -0.1
1,247,443 - 1.8
1,247,564 + -0.5
1,247,573 + -1.2
1,247,576 + 1.0
1,247,578 + 0.6
1,247,581 - 0.2
1,247,583 - 0.3
1,247,591 - -0.6
1,247,598 - -1.7
1,247,617 + 0.4
1,247,635 + -1.0
1,247,692 + -0.2
1,247,696 + 0.9
1,247,704 - -1.4
1,247,717 - -0.2
1,247,719 + -0.3
1,247,723 + 0.8
1,247,748 - -1.0
1,247,772 - 0.2
1,247,783 - 1.7
1,247,884 + 16813 mRNA_8445 0.12 -0.3
1,247,984 + 16813 mRNA_8445 0.16 0.9
1,248,023 + 16813 mRNA_8445 0.18 2.3
1,248,172 + 16813 mRNA_8445 0.24 0.4
1,248,355 - 16813 mRNA_8445 0.33 -2.2
1,248,435 - 16813 mRNA_8445 0.36 0.0
1,248,605 - 16813 mRNA_8445 0.44 0.3
1,248,606 + 16813 mRNA_8445 0.44 -0.1
1,248,636 + 16813 mRNA_8445 0.45 -1.2
1,248,986 + 16813 mRNA_8445 0.61 0.2
1,249,066 - 16813 mRNA_8445 0.65 -0.0
1,249,136 - 16813 mRNA_8445 0.68 0.6
1,249,167 - 16813 mRNA_8445 0.69 0.8
1,249,551 - 16813 mRNA_8445 0.86 -1.5
1,249,570 - 16813 mRNA_8445 0.87 -2.7
1,249,604 - 16813 mRNA_8445 0.89 -0.0
1,249,736 - 0.2
1,249,831 - -0.1
1,250,241 + 0.3
1,250,354 - 0.7
1,250,363 + -0.7
1,250,419 - 0.3
1,250,462 - -0.3
1,250,763 - 16814 mRNA_8446 0.16 1.8
1,250,779 - 16814 mRNA_8446 0.16 -0.7