Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8263

Experiments: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8262: 16630 - K01958 PC, pyc pyruvate carboxylase, at 792361 to 796882 16630 mRNA_8263: 16631 - KOG1432 Predicted DNA repair exonuclease SIA1, at 797648 to 800551 16631 mRNA_8264: 16632 - KOG4754 Predicted phosphoglycerate mutase, at 800850 to 802295 16632

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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796,756 + -1.7
796,770 + -3.9
796,773 - -3.1
796,793 - -4.9
796,809 + -1.6
796,906 - -2.7
796,906 + -4.2
796,926 + -4.5
796,939 + -1.8
796,944 - -2.8
796,956 + -1.2
797,053 - -0.5
797,057 - -0.2
797,082 - -1.0
797,084 + -1.8
797,087 - 1.4
797,090 + -0.9
797,112 - 0.6
797,221 + 0.4
797,222 + -0.1
797,223 - -1.1
797,238 - 1.0
797,251 - 0.1
797,275 + 2.9
797,283 - 0.4
797,284 + -0.7
797,288 - -2.0
797,300 + -1.7
797,301 + -0.6
797,319 - -0.5
797,321 - -1.1
797,356 + -0.0
797,360 - 1.3
797,361 - -0.6
797,376 - -1.0
797,377 + -0.3
797,389 - 0.4
797,408 + 0.4
797,413 - -0.7
797,415 + 0.4
797,424 + 0.6
797,714 - 0.8
797,863 - -0.4
797,872 - 0.6
797,890 + -1.1
798,027 + 16631 mRNA_8263 0.13 -0.4
798,299 - 16631 mRNA_8263 0.22 1.3
798,593 - 16631 mRNA_8263 0.33 0.6
798,847 + 16631 mRNA_8263 0.41 0.6
799,171 - 16631 mRNA_8263 0.52 0.7
799,718 + 16631 mRNA_8263 0.71 0.6
800,021 - 16631 mRNA_8263 0.82 0.5
800,035 + 16631 mRNA_8263 0.82 0.6
800,188 + 16631 mRNA_8263 0.87 0.0
800,300 - -0.7
800,626 - 0.5
800,648 + 2.0
801,024 + 16632 mRNA_8264 0.12 0.7
801,195 + 16632 mRNA_8264 0.24 1.2
801,226 - 16632 mRNA_8264 0.26 0.6