Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7942

Experiments: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7940: 16308 - Hypothetical Protein, at 60107 to 61381 16308 mRNA_7941: 16309 - Hypothetical Protein, at 61623 to 61945 16309 mRNA_7942: 16310 - K12824 TCERG1, CA150 transcription elongation regulator 1, at 62103 to 65141 16310 mRNA_7943: 16311 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 65547 to 69135 16311

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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61,125 + 16308 mRNA_7940 0.80 0.2
61,208 + 16308 mRNA_7940 0.86 -0.1
61,311 - 0.5
61,317 + 1.6
61,512 + -0.6
61,796 + 16309 mRNA_7941 0.54 0.4
61,806 - 16309 mRNA_7941 0.57 0.6
61,807 + 16309 mRNA_7941 0.57 -0.3
61,924 + -0.1
62,085 - 0.4
62,466 + 16310 mRNA_7942 0.12 0.1
62,911 - 16310 mRNA_7942 0.27 1.6
62,945 + 16310 mRNA_7942 0.28 1.7
62,946 - 16310 mRNA_7942 0.28 1.5
62,971 - 16310 mRNA_7942 0.29 1.5
63,230 + 16310 mRNA_7942 0.37 0.1
63,233 - 16310 mRNA_7942 0.37 1.4
63,582 - 16310 mRNA_7942 0.49 0.1
64,078 - 16310 mRNA_7942 0.65 0.4
65,252 + -0.9
65,353 + 0.0
65,464 + 0.5
65,466 - -0.8
65,503 - -0.4
65,562 + 0.8
65,973 - 16311 mRNA_7943 0.12 0.1
66,101 - 16311 mRNA_7943 0.15 -1.3