Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7885

Experiments: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7884: 16252 - KOG1911 Heterochromatin-associated protein HP1 and related CHROMO domain proteins, at 1296851 to 1297993 16252 mRNA_7885: 16253 - KOG0137 Very-long-chain acyl-CoA dehydrogenase, at 1298396 to 1300627 16253 mRNA_7886: 16254 - KOG2913 Predicted membrane protein, at 1300856 to 1302140 16254

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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1,297,572 + 16252 mRNA_7884 0.63 0.3
1,297,589 + 16252 mRNA_7884 0.65 -0.0
1,297,866 - 16252 mRNA_7884 0.89 0.2
1,297,875 + 16252 mRNA_7884 0.90 1.1
1,298,024 - -0.0
1,298,045 - 0.6
1,298,045 - 0.1
1,298,060 + 0.4
1,298,067 + 0.2
1,298,176 + 1.0
1,298,190 + -0.4
1,298,211 + -0.7
1,298,214 - 0.8
1,298,270 - -0.0
1,298,299 - -0.3
1,298,306 + -0.8
1,298,309 + 0.4
1,298,317 - -0.4
1,298,317 - 0.6
1,298,318 - -0.0
1,298,319 - 1.1
1,298,321 - 0.5
1,298,325 + 0.6
1,298,430 - 0.4
1,298,626 - 16253 mRNA_7885 0.10 0.7
1,298,634 + 16253 mRNA_7885 0.11 0.6
1,298,634 + 16253 mRNA_7885 0.11 -0.3
1,298,676 + 16253 mRNA_7885 0.13 -0.2
1,298,934 + 16253 mRNA_7885 0.24 0.1
1,299,228 + 16253 mRNA_7885 0.37 -0.4
1,299,464 - 16253 mRNA_7885 0.48 -1.8
1,299,495 - 16253 mRNA_7885 0.49 0.4
1,299,610 + 16253 mRNA_7885 0.54 -0.3
1,299,666 + 16253 mRNA_7885 0.57 0.6
1,299,673 - 16253 mRNA_7885 0.57 0.1
1,299,689 - 16253 mRNA_7885 0.58 -1.5
1,299,771 - 16253 mRNA_7885 0.62 -0.9
1,299,778 + 16253 mRNA_7885 0.62 -0.8
1,299,804 + 16253 mRNA_7885 0.63 1.0
1,300,073 - 16253 mRNA_7885 0.75 0.5
1,300,074 - 16253 mRNA_7885 0.75 0.7
1,300,118 - 16253 mRNA_7885 0.77 0.3
1,300,123 + 16253 mRNA_7885 0.77 1.6
1,300,145 - 16253 mRNA_7885 0.78 -1.1
1,300,244 - 16253 mRNA_7885 0.83 -1.0
1,300,256 - 16253 mRNA_7885 0.83 0.2
1,300,268 + 16253 mRNA_7885 0.84 0.5
1,300,275 + 16253 mRNA_7885 0.84 -0.6
1,300,282 - 16253 mRNA_7885 0.84 -1.4
1,300,298 + 16253 mRNA_7885 0.85 -0.1
1,300,301 - 16253 mRNA_7885 0.85 -0.9
1,300,310 - 16253 mRNA_7885 0.86 -0.6
1,300,381 - 16253 mRNA_7885 0.89 -1.4
1,300,384 + 16253 mRNA_7885 0.89 -1.4
1,300,405 - -0.0
1,300,432 + 0.4
1,300,443 - 1.7
1,300,463 - 1.0
1,300,494 + -1.2
1,300,592 + -0.6
1,300,736 + 0.6
1,300,850 + 1.5
1,301,253 - 16254 mRNA_7886 0.31 1.1
1,301,409 + 16254 mRNA_7886 0.43 1.0
1,301,422 + 16254 mRNA_7886 0.44 0.2
1,301,435 + 16254 mRNA_7886 0.45 -0.0
1,301,575 - 16254 mRNA_7886 0.56 0.3