Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7219

Experiments: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7218: 15586 - K20405 NPRL2 nitrogen permease regulator 2-like protein, at 1156611 to 1158564 15586 mRNA_7219: 15587 - K15053 CHMP7 charged multivesicular body protein 7, at 1158652 to 1160281 15587 mRNA_7220: 15588 - HMMPfam-zinc-RING finger domain-PF14634,ProSitePatterns-Zinc finger RING-type signature.-PS00518,ProSiteProfiles-Zinc finger RING-type profile.-PS50089,SUPERFAMILY--SSF57850, at 1160377 to 1161832 15588

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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1,158,088 + 15586 mRNA_7218 0.76 1.0
1,158,276 + 15586 mRNA_7218 0.85 1.0
1,158,369 - -0.3
1,159,292 - 15587 mRNA_7219 0.39 -0.4
1,159,726 + 15587 mRNA_7219 0.66 -2.6
1,160,155 - 0.4
1,160,163 - -1.8
1,160,184 - 0.5
1,160,299 - 0.9
1,160,306 + 0.6
1,160,313 + -0.3
1,160,600 - 15588 mRNA_7220 0.15 1.4
1,160,762 - 15588 mRNA_7220 0.26 1.4
1,161,180 - 15588 mRNA_7220 0.55 -0.4