Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7176

Experiments: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7175: 15543 - K12272 SRPRB, SRP102 signal recognition particle receptor subunit beta, at 1053576 to 1055087 15543 mRNA_7176: 15544 - KOG4635 Vacuolar import and degradation protein, at 1055308 to 1056885 15544 mRNA_7177: 15545 - KOG0565 Inositol polyphosphate 5-phosphatase and related proteins, at 1057170 to 1058665 15545

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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1,054,447 + 15543 mRNA_7175 0.58 -2.4
1,054,553 - 15543 mRNA_7175 0.65 -0.4
1,054,999 - -0.6
1,055,006 - -0.0
1,055,052 - 0.6
1,055,191 - 1.4
1,055,199 + 1.1
1,055,204 + -1.5
1,055,254 + 0.2
1,055,345 + 0.1
1,055,372 + 1.1
1,056,076 - 15544 mRNA_7176 0.49 0.5
1,056,377 + 15544 mRNA_7176 0.68 -0.8
1,056,504 - 15544 mRNA_7176 0.76 0.5
1,056,692 + 15544 mRNA_7176 0.88 0.4
1,056,707 - 15544 mRNA_7176 0.89 -0.1
1,056,942 - -0.5
1,056,977 - 0.4
1,057,067 - -0.7
1,057,081 + 3.5
1,057,112 - -1.5
1,057,119 + 0.1
1,057,119 - 0.9
1,057,120 + -0.3
1,057,120 - -0.8
1,057,120 - -1.8
1,057,120 - 0.7
1,057,120 - 0.2
1,057,120 - 0.5
1,057,121 + -0.4
1,057,121 + -0.4
1,057,122 + 0.1
1,057,122 + -0.5
1,057,123 + -2.3
1,057,126 - -0.6
1,057,126 + -0.5
1,057,141 + -0.5
1,057,144 - -2.4
1,057,149 + 0.3
1,057,153 + 0.3
1,057,282 + 1.1
1,057,298 - -1.2
1,057,298 - 1.2
1,057,468 - 15545 mRNA_7177 0.20 -0.4
1,057,561 + 15545 mRNA_7177 0.26 -0.1