Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7169

Experiments: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7168: 15536 - HMMPfam-WD domain, G-beta repeat-PF00400,HMMPfam-PFU (PLAA family ubiquitin binding)-PF09070,PRINTS-G protein beta WD-40 repeat signature-PR00320,ProSiteProfiles-Trp-Asp (WD) repeats profile.-PS50082,ProSiteProfiles-Trp-Asp (WD) repeats circular profile.-PS50294,ProSiteProfiles-PFU domain profile.-PS51394,SMART-WD40 repeats-SM00320,SUPERFAMILY--SSF50978, at 1036576 to 1038409 15536 mRNA_7169: 15537 - K13137 STRAP, UNRIP serine-threonine kinase receptor-associated protein, at 1038666 to 1040206 15537 mRNA_7170: 15538 - Hypothetical Protein, at 1040461 to 1043299 15538

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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1,037,769 - 15536 mRNA_7168 0.65 -0.2
1,037,797 + 15536 mRNA_7168 0.67 0.2
1,037,803 - 15536 mRNA_7168 0.67 0.6
1,037,935 + 15536 mRNA_7168 0.74 2.7
1,037,998 - 15536 mRNA_7168 0.78 0.5
1,038,097 - 15536 mRNA_7168 0.83 0.5
1,038,097 + 15536 mRNA_7168 0.83 0.2
1,038,209 - 15536 mRNA_7168 0.89 -0.7
1,038,233 - 1.1
1,038,235 - -0.2
1,038,240 + 0.5
1,038,380 + 0.7
1,038,380 - 0.2
1,038,387 + -0.2
1,038,398 - 0.5
1,038,400 + -0.1
1,038,537 - -1.4
1,038,538 + -0.7
1,038,545 - 0.0
1,038,552 + 0.1
1,039,125 + 15537 mRNA_7169 0.30 0.8
1,039,688 - 15537 mRNA_7169 0.66 1.3
1,040,270 - 1.6
1,040,291 - -0.5
1,040,433 + 0.4
1,040,435 - 2.0
1,040,574 + 3.5
1,040,591 - 2.2
1,040,595 - 0.1
1,040,596 + 0.6
1,040,739 + 1.3
1,040,993 - 15538 mRNA_7170 0.19 0.4
1,041,023 - 15538 mRNA_7170 0.20 1.0
1,041,186 - 15538 mRNA_7170 0.26 1.4