Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6702

Experiments: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6701: 15069 - K08192 DAL MFS transporter, ACS family, allantoate permease, at 1482980 to 1485101 15069 mRNA_6702: 15070 - K08192 DAL MFS transporter, ACS family, allantoate permease, at 1485831 to 1488005 15070 mRNA_6703: 15071 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 1488338 to 1490366 15071

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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1,485,028 + 0.3
1,485,182 - 1.4
1,485,461 - 0.1
1,485,462 - 0.5
1,485,513 + -0.3
1,485,515 - -1.0
1,485,550 + -0.4
1,485,557 - 0.3
1,485,562 - 0.2
1,485,566 + -1.4
1,485,580 - 0.4
1,485,591 - -0.7
1,485,611 - -0.7
1,485,612 - -0.7
1,485,727 - -0.6
1,485,906 + -0.0
1,485,917 - 2.5
1,486,127 + 15070 mRNA_6702 0.14 -0.7
1,486,232 - 15070 mRNA_6702 0.18 -0.1
1,486,247 + 15070 mRNA_6702 0.19 0.7
1,486,337 + 15070 mRNA_6702 0.23 -0.5
1,486,487 - 15070 mRNA_6702 0.30 -0.3
1,486,806 + 15070 mRNA_6702 0.45 0.2
1,486,810 - 15070 mRNA_6702 0.45 1.2
1,487,173 - 15070 mRNA_6702 0.62 0.0
1,487,244 - 15070 mRNA_6702 0.65 2.1
1,487,284 + 15070 mRNA_6702 0.67 -0.0
1,487,326 + 15070 mRNA_6702 0.69 -0.4
1,487,394 - 15070 mRNA_6702 0.72 0.9
1,487,513 - 15070 mRNA_6702 0.77 -1.6
1,487,514 + 15070 mRNA_6702 0.77 0.3
1,487,542 + 15070 mRNA_6702 0.79 1.0
1,487,717 + 15070 mRNA_6702 0.87 0.4
1,487,829 + -0.6
1,487,832 - 1.2
1,488,104 + -0.0
1,488,110 - -0.5
1,488,117 + 1.8
1,488,131 + 0.5
1,488,141 + 0.7
1,488,141 + 1.6
1,488,147 - 0.2
1,488,167 - -3.2
1,488,175 + -1.7
1,488,294 - -0.6
1,488,300 - 1.4
1,488,316 - -0.5
1,488,451 + 0.0
1,488,757 + 15071 mRNA_6703 0.21 0.2
1,488,871 + 15071 mRNA_6703 0.26 -0.2
1,488,881 + 15071 mRNA_6703 0.27 -1.5