Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6133

Experiments: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6132: 14500 - K20630 CHN1_2, ARHGAP2_3 chimaerin, at 80380 to 84392 14500 mRNA_6133: 14501 - HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 85316 to 87118 14501 mRNA_6134: 14502 - KOG1477 SPRY domain-containing proteins, at 88060 to 89781 14502

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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84,582 + -0.1
84,720 - -1.3
84,721 - -1.3
84,869 - -2.3
84,871 - -2.1
84,890 - 0.7
84,935 + -0.7
85,033 - -0.1
85,039 - 0.7
85,045 - 0.2
85,056 - -0.0
85,064 - 1.0
85,075 - -0.6
85,095 - -0.1
85,099 - 0.9
85,106 - 0.5
85,113 - -0.2
85,115 + 0.4
85,144 + 0.7
85,282 - 0.3
86,214 - 14501 mRNA_6133 0.50 0.3
86,287 - 14501 mRNA_6133 0.54 1.2
86,457 - 14501 mRNA_6133 0.63 0.5
86,565 + 14501 mRNA_6133 0.69 0.3
86,687 + 14501 mRNA_6133 0.76 -0.1
86,706 - 14501 mRNA_6133 0.77 -1.8
86,726 - 14501 mRNA_6133 0.78 -0.2
86,840 - 14501 mRNA_6133 0.85 -0.6
86,842 - 14501 mRNA_6133 0.85 0.2
86,859 - 14501 mRNA_6133 0.86 1.1
86,864 - 14501 mRNA_6133 0.86 0.5
86,877 - 14501 mRNA_6133 0.87 0.0
87,002 - 0.1
87,012 - -1.4
87,018 + -0.5
87,027 + -0.5
87,033 + 1.3
87,137 - -0.5
87,139 - 1.6
87,139 - 1.0
87,139 - 0.8
87,151 + 0.2
87,156 - -0.2
87,164 + 0.6
87,171 - 1.7
87,174 + 0.5
87,176 - 0.4
87,183 + -2.7
87,184 + -0.5
87,193 - -0.3
87,198 - -0.2
87,199 - 1.3
87,199 - -0.2
87,199 + 0.7
87,200 + 0.6
87,339 - -0.3
87,341 - 0.8
87,341 + 0.2
87,342 - -0.2
87,346 - 0.2
87,347 - 0.8
87,347 - 1.8
87,352 + 0.5
87,357 - 1.8
87,359 - -0.5
87,362 - 0.4
87,363 - -0.0
87,368 - 0.6
87,377 - -0.8
87,393 - 0.5
87,394 + -0.4
87,515 + 0.2
87,518 - 0.8
87,518 + 1.0
87,698 - -0.9