Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6106

Experiments: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6106: 14474 - K08332 VAC8 vacuolar protein 8, at 223 to 3658 14474 mRNA_6107: 14475 - K14401 CPSF1, CFT1 cleavage and polyadenylation specificity factor subunit 1, at 3990 to 10005 14475

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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39 + -0.8
39 + 1.2
40 + -0.9
40 + 0.8
40 + -0.4
41 + -0.4
56 + 1.4
56 + -0.3
56 + 0.1
58 + 0.3
59 + -0.3
59 + -3.1
62 - 0.0
65 - -0.1
77 + 0.9
84 + -0.3
102 + -0.3
137 + -0.7
151 + -0.3
200 + 2.3
208 + -1.3
216 + 0.6
229 + -2.7
348 - -0.3
430 + 0.6
498 - -0.7
502 - 0.3
685 + 14474 mRNA_6106 0.13 -1.5
747 + 14474 mRNA_6106 0.15 0.4
755 + 14474 mRNA_6106 0.15 -0.4
946 + 14474 mRNA_6106 0.21 -0.9
975 + 14474 mRNA_6106 0.22 0.6
1,245 + 14474 mRNA_6106 0.30 0.1
2,125 + 14474 mRNA_6106 0.55 -0.2
2,839 - 14474 mRNA_6106 0.76 0.9
3,125 - 14474 mRNA_6106 0.84 -1.6
3,248 - 14474 mRNA_6106 0.88 -3.1
3,570 + -0.7
3,665 + 1.2
3,692 + 1.0
3,706 + -0.7
3,726 + 0.6
3,820 + -0.3
3,853 + 0.2
3,859 + -1.1
3,909 - 0.7
3,929 - 0.9