Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6089

Experiments: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6088: 14456 - KOG1294 Apurinic/apyrimidinic endonuclease and related enzymes, at 1619714 to 1621699 14456 mRNA_6089: 14457 - KOG3098 Uncharacterized conserved protein, at 1622140 to 1623844 14457 mRNA_6090: 14458 - KOG0143 Iron/ascorbate family oxidoreductases, at 1624462 to 1625947 14458

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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1,621,142 + 14456 mRNA_6088 0.72 1.1
1,621,156 + 14456 mRNA_6088 0.73 1.1
1,621,310 - 14456 mRNA_6088 0.80 2.4
1,621,315 - 14456 mRNA_6088 0.81 -0.5
1,621,435 - 14456 mRNA_6088 0.87 -0.2
1,621,572 - 1.6
1,621,578 + -0.4
1,621,605 - 1.6
1,621,731 - 1.2
1,621,733 + -0.6
1,621,735 + 0.4
1,621,735 + -2.0
1,621,756 - 1.2
1,622,062 - 0.1
1,622,191 - 0.4
1,622,525 - 14457 mRNA_6089 0.23 -2.1
1,622,610 - 14457 mRNA_6089 0.28 -0.9
1,622,655 - 14457 mRNA_6089 0.30 0.8
1,622,699 - 14457 mRNA_6089 0.33 -0.1
1,622,705 - 14457 mRNA_6089 0.33 0.7
1,623,014 - 14457 mRNA_6089 0.51 1.7
1,623,166 + 14457 mRNA_6089 0.60 0.5
1,623,341 - 14457 mRNA_6089 0.70 0.9
1,623,625 - 14457 mRNA_6089 0.87 0.5
1,623,770 - 0.7
1,623,791 + -1.1
1,623,792 + -0.8
1,623,811 - 2.0
1,623,983 - -0.5
1,624,065 - 0.2
1,624,069 - -0.3
1,624,081 - -0.5
1,624,105 - -0.8
1,624,212 + -0.7
1,624,215 - 0.4
1,624,226 + 0.2
1,624,242 + 0.1
1,624,243 - 0.1
1,624,251 + -1.1
1,624,296 + 0.1
1,624,365 + -0.7
1,624,369 - 0.7
1,624,370 + -1.3
1,624,382 - 0.0
1,624,485 + 1.4
1,624,505 - 0.1
1,624,525 + 1.0
1,624,538 + 1.5
1,624,557 - 0.3
1,624,652 + 14458 mRNA_6090 0.13 1.0
1,624,716 - 14458 mRNA_6090 0.17 -1.1
1,624,831 - 14458 mRNA_6090 0.25 0.2