Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6069

Experiments: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6068: 14436 - K01855 PUS3, DEG1 tRNA pseudouridine38/39 synthase, at 1565230 to 1567371 14436 mRNA_6069: 14437 - KOG0198 MEKK and related serine/threonine protein kinases, at 1567592 to 1572715 14437 mRNA_6070: 14438 - K14552 NAN1, UTP17, WDR75 NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17), at 1572879 to 1575986 14438

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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1,566,776 + 14436 mRNA_6068 0.72 0.1
1,567,266 - 0.5
1,567,438 - -1.2
1,567,752 - 0.6
1,567,864 - 0.2
1,567,960 + 1.2
1,568,030 + 0.9
1,568,120 - 14437 mRNA_6069 0.10 -0.6
1,568,150 - 14437 mRNA_6069 0.11 -1.3
1,568,332 + 14437 mRNA_6069 0.14 1.7
1,568,451 + 14437 mRNA_6069 0.17 0.5
1,568,570 + 14437 mRNA_6069 0.19 0.4
1,568,575 - 14437 mRNA_6069 0.19 0.4
1,568,940 - 14437 mRNA_6069 0.26 0.5
1,569,031 - 14437 mRNA_6069 0.28 1.5
1,569,157 - 14437 mRNA_6069 0.31 -0.6
1,569,319 - 14437 mRNA_6069 0.34 -0.5
1,569,721 + 14437 mRNA_6069 0.42 -0.0
1,569,737 - 14437 mRNA_6069 0.42 -1.8
1,570,200 + 14437 mRNA_6069 0.51 1.1
1,570,448 - 14437 mRNA_6069 0.56 -0.2
1,570,573 + 14437 mRNA_6069 0.58 -1.7
1,570,625 - 14437 mRNA_6069 0.59 2.1
1,570,647 - 14437 mRNA_6069 0.60 0.9
1,570,776 - 14437 mRNA_6069 0.62 -1.2
1,570,779 - 14437 mRNA_6069 0.62 0.7
1,570,884 - 14437 mRNA_6069 0.64 0.8
1,571,340 + 14437 mRNA_6069 0.73 -0.2
1,572,362 + 2.5
1,572,421 - 1.0
1,572,491 + 0.9
1,572,505 + 0.4
1,572,508 + 0.8
1,572,623 - 1.1
1,572,623 - 0.9
1,572,634 - 0.2
1,572,798 - 0.4
1,572,823 - 0.1
1,572,831 - -0.8