Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5948

Experiments: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5947: 14315 - KOG1001 Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily, at 1298029 to 1303055 14315 mRNA_5948: 14316 - HMMPfam-Zinc finger C-x8-C-x5-C-x3-H type-PF14608,ProSiteProfiles-Zinc finger C3H1-type profile.-PS50103,SMART-zinc finger-SM00356, at 1303532 to 1306602 14316 mRNA_5949: 14317 - K01046 E3.1.1.3 triacylglycerol lipase, at 1307472 to 1308620 14317

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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1,303,239 + 0.8
1,304,960 + 14316 mRNA_5948 0.46 -0.2
1,305,296 - 14316 mRNA_5948 0.57 -1.6
1,305,464 - 14316 mRNA_5948 0.63 -0.4
1,305,477 - 14316 mRNA_5948 0.63 -1.5
1,305,902 + 14316 mRNA_5948 0.77 0.8
1,306,032 + 14316 mRNA_5948 0.81 0.8
1,306,202 + 14316 mRNA_5948 0.87 -0.4
1,306,203 + 14316 mRNA_5948 0.87 -1.3
1,306,206 + 14316 mRNA_5948 0.87 0.3
1,306,221 - 14316 mRNA_5948 0.88 0.3
1,306,344 - -0.6
1,306,488 - -1.4
1,306,505 - -1.0
1,306,645 - 1.2
1,306,649 - -0.0
1,306,670 + 1.2
1,306,869 + -0.2
1,306,979 + -0.5
1,307,111 - 0.1
1,307,125 - -0.1
1,307,129 + 0.3
1,307,142 + 0.4
1,307,272 - -0.4
1,307,277 - 0.3