Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5646

Experiments: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5645: 14013 - BLAST putative alkaline phosphatase [Phaeomoniella chlamydo..., at 584713 to 586254 14013 mRNA_5646: 14014 - K00826 E2.6.1.42, ilvE branched-chain amino acid aminotransferase, at 586465 to 587964 14014 mRNA_5647: 14015 - KOG4719 Nuclear pore complex protein, at 588479 to 592654 14015

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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585,542 - 14013 mRNA_5645 0.54 0.9
585,817 + 14013 mRNA_5645 0.72 0.6
585,839 - 14013 mRNA_5645 0.73 0.2
585,844 + 14013 mRNA_5645 0.73 -1.6
585,872 + 14013 mRNA_5645 0.75 -0.8
586,004 - 14013 mRNA_5645 0.84 0.4
586,166 + -2.5
586,166 + -0.3
586,167 + 2.4
586,283 - 1.8
586,304 - 0.2
586,310 - 1.0
586,316 + 0.6
586,325 + 0.5
586,332 + -0.6
586,333 + 2.0
586,333 - 1.7
586,333 - 0.1
586,354 + 0.3
586,381 - -0.7
586,400 - 0.3
586,407 + 1.7
586,413 + -1.5
586,428 + 0.0
586,435 + 0.3
586,435 + 0.0
586,435 + -0.2
586,442 - 1.1
586,453 + 0.2
586,457 + -0.1
586,464 + -0.1
586,464 - 0.2
586,601 + 0.3
586,609 - -0.9
586,638 + 14014 mRNA_5646 0.12 1.2
586,877 + 14014 mRNA_5646 0.27 -1.9
586,906 + 14014 mRNA_5646 0.29 0.6
587,037 - 14014 mRNA_5646 0.38 0.8
587,808 + 14014 mRNA_5646 0.90 0.0
587,882 - 1.7
587,908 + 1.3
587,931 - 2.5
588,054 + -0.3
588,057 - 0.6
588,057 - -0.4
588,058 + 2.9
588,101 + 0.8
588,106 + 1.1
588,107 + 0.4
588,121 + 0.8
588,213 + 1.1
588,250 + 1.3
588,548 - 0.7
588,661 - -1.2
588,804 - 0.5
588,824 + -1.6