Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5609

Experiments: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5608: 13976 - K03018 RPC1, POLR3A DNA-directed RNA polymerase III subunit RPC1, at 494885 to 501857 13976 mRNA_5609: 13977 - HMMPfam-Leucine Rich Repeat-PF00560,ProSiteProfiles-Leucine-rich repeat profile.-PS51450,SMART-Leucine-rich repeats, typical (most populated) subfamily-SM00369,SUPERFAMILY--SSF52058, at 502227 to 504581 13977 mRNA_5610: 13978 - KOG1611 Predicted short chain-type dehydrogenase, at 504670 to 507396 13978

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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501,868 - 1.2
502,016 - 0.1
502,129 - 0.3
502,143 - 0.0
502,152 - -0.3
502,153 - 0.3
502,154 + 0.4
502,157 - 0.0
502,293 - 1.0
502,452 - 1.4
502,473 - 13977 mRNA_5609 0.10 0.4
502,477 + 13977 mRNA_5609 0.11 0.0
502,477 + 13977 mRNA_5609 0.11 0.5
502,748 + 13977 mRNA_5609 0.22 -0.2
503,040 - 13977 mRNA_5609 0.35 0.2
503,646 - 13977 mRNA_5609 0.60 0.6
503,891 + 13977 mRNA_5609 0.71 -1.1
503,903 + 13977 mRNA_5609 0.71 0.4
504,176 - 13977 mRNA_5609 0.83 -1.5
504,191 - 13977 mRNA_5609 0.83 2.4
504,191 - 13977 mRNA_5609 0.83 0.3
504,222 + 13977 mRNA_5609 0.85 1.0
504,286 + 13977 mRNA_5609 0.87 -1.6
505,095 + 13978 mRNA_5610 0.16 1.0
505,536 + 13978 mRNA_5610 0.32 -1.1