Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5601

Experiments: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5600: 13968 - BLAST polysaccharide lyase family 14 protein [Sistotremastr..., at 479032 to 480783 13968 mRNA_5601: 13969 - K15014 SLC29A1_2_3, ENT1_2_3 solute carrier family 29 (equilibrative nucleoside transporter), member 1/2/3, at 481051 to 483053 13969 mRNA_5602: 13970 - HMMPfam-AAA-ATPase Vps4-associated protein 1-PF08432, at 483682 to 484493 13970

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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480,195 + 13968 mRNA_5600 0.66 1.0
480,211 - 13968 mRNA_5600 0.67 0.5
480,339 - 13968 mRNA_5600 0.75 -0.9
480,357 + 13968 mRNA_5600 0.76 0.7
480,522 + 13968 mRNA_5600 0.85 -0.3
480,649 - 1.3
480,659 + 2.0
480,791 + 1.2
481,805 - 13969 mRNA_5601 0.38 0.9
481,944 - 13969 mRNA_5601 0.45 0.9
481,984 + 13969 mRNA_5601 0.47 0.1
482,243 + 13969 mRNA_5601 0.60 0.5
482,717 - 13969 mRNA_5601 0.83 0.6
482,732 - 13969 mRNA_5601 0.84 1.4
482,833 - 13969 mRNA_5601 0.89 -0.3
482,848 + 13969 mRNA_5601 0.90 0.8
482,969 - 0.3
483,425 - -0.4
483,569 + -0.6