Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5525

Experiments: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5524: 13892 - KOG3002 Zn finger protein, at 297072 to 298317 13892 mRNA_5525: 13893 - HMMPfam-Xyloglucan fucosyltransferase-PF03254, at 299170 to 301469 13893 mRNA_5526: 13894 - K00052 leuB 3-isopropylmalate dehydrogenase, at 301709 to 303276 13894

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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298,175 - 13892 mRNA_5524 0.89 0.3
298,317 + 0.4
298,500 + -0.5
298,517 + 0.8
298,646 + 1.5
298,934 + 0.4
299,046 - -0.1
299,058 - 1.2
299,061 + 2.5
299,071 + 1.0
299,071 + 0.4
299,071 + 0.3
299,074 + 0.6
299,120 - 0.7
299,128 - -0.1
299,257 - -0.4
299,264 - 0.9
299,278 - -0.2
299,414 - 13893 mRNA_5525 0.11 0.1
299,462 + 13893 mRNA_5525 0.13 -0.6
299,518 - 13893 mRNA_5525 0.15 1.2
299,525 + 13893 mRNA_5525 0.15 0.2
299,577 - 13893 mRNA_5525 0.18 0.7
299,579 + 13893 mRNA_5525 0.18 0.7
299,587 + 13893 mRNA_5525 0.18 -0.9
299,730 + 13893 mRNA_5525 0.24 0.6
299,873 - 13893 mRNA_5525 0.31 0.4
300,005 - 13893 mRNA_5525 0.36 -0.3
300,008 + 13893 mRNA_5525 0.36 -1.2
300,141 - 13893 mRNA_5525 0.42 -0.7
300,277 + 13893 mRNA_5525 0.48 0.4
300,296 - 13893 mRNA_5525 0.49 0.7
300,296 - 13893 mRNA_5525 0.49 -0.2
300,301 - 13893 mRNA_5525 0.49 0.6
300,427 + 13893 mRNA_5525 0.55 0.9
300,584 - 13893 mRNA_5525 0.61 -0.4
300,608 - 13893 mRNA_5525 0.63 0.1
300,759 - 13893 mRNA_5525 0.69 -1.2
300,818 - 13893 mRNA_5525 0.72 0.1
300,892 - 13893 mRNA_5525 0.75 -0.3
300,929 - 13893 mRNA_5525 0.76 0.6
300,943 + 13893 mRNA_5525 0.77 -0.3
301,041 - 13893 mRNA_5525 0.81 0.6
301,058 + 13893 mRNA_5525 0.82 0.5
301,064 - 13893 mRNA_5525 0.82 0.3
301,161 + 13893 mRNA_5525 0.87 1.0
301,474 - -0.8
301,774 + -0.7