Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5470

Experiments: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5469: 13837 - HMMPfam-Bacteriorhodopsin-like protein-PF01036,PRINTS-Bacterial opsin signature-PR00251,ProSitePatterns-Bacterial rhodopsins retinal binding site.-PS00327,ProSitePatterns-Bacterial rhodopsins signature 1.-PS00950,SMART-Bacteriorhodopsin-like protein-SM01021,SUPERFAMILY--SSF81321, at 167116 to 168617 13837 mRNA_5470: 13838 - K00599 METTL6 methyltransferase-like protein 6, at 168838 to 170246 13838 mRNA_5471: 13839 - KOG4696 Uncharacterized conserved protein, at 170763 to 172785 13839

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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167,978 + 13837 mRNA_5469 0.57 -0.2
168,119 - 13837 mRNA_5469 0.67 0.5
168,167 + 13837 mRNA_5469 0.70 0.3
168,235 - 13837 mRNA_5469 0.75 0.7
168,362 - 13837 mRNA_5469 0.83 -0.8
168,376 - 13837 mRNA_5469 0.84 -0.5
168,382 + 13837 mRNA_5469 0.84 0.8
168,382 + 13837 mRNA_5469 0.84 -0.2
168,394 + 13837 mRNA_5469 0.85 0.7
168,502 + 0.9
168,637 - -0.1
168,850 + 0.4
169,306 + 13838 mRNA_5470 0.33 1.4
169,423 + 13838 mRNA_5470 0.42 -0.1
169,423 + 13838 mRNA_5470 0.42 -1.5
169,423 - 13838 mRNA_5470 0.42 1.3
169,450 - 13838 mRNA_5470 0.43 1.3
169,571 - 13838 mRNA_5470 0.52 0.9
169,587 + 13838 mRNA_5470 0.53 -0.4
169,591 + 13838 mRNA_5470 0.53 0.4
170,001 + 13838 mRNA_5470 0.83 1.7
170,307 + 0.4
170,434 - 1.1
170,450 - 0.7
170,579 - 0.1
170,600 - 0.0
170,627 - -0.8
170,647 + -1.8
170,764 - -1.6
171,206 - 13839 mRNA_5471 0.22 -1.2