Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5394

Experiments: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5394: 13762 - SUPERFAMILY--SSF54897, at 121 to 1074 13762 mRNA_5395: 13763 - KOG4551 GPI-GlcNAc transferase complex, PIG-H component, involved in glycosylphosphatidylinositol anchor biosynthesis, at 1148 to 1997 13763

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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1 + -1.3
1 + 0.0
1 + 1.8
1 + -1.5
23 + -1.3
29 + 0.7
29 + 1.8
34 + -2.8
39 + 0.1
39 + -0.6
47 + 1.3
50 + -2.0
50 + 0.4
50 + -0.6
50 + 1.0
50 - -0.3
51 + 1.7
61 + 2.8
62 + -0.0
96 + 1.9
116 + 0.9
158 - 0.2
159 - -0.1
160 - 1.1
169 - 0.1
180 - 1.5
189 + -0.0
198 + -0.1
201 - 0.9
208 - -0.1
210 + 1.0
225 + 13762 mRNA_5394 0.11 -1.2
225 + 13762 mRNA_5394 0.11 0.4
244 + 13762 mRNA_5394 0.13 -3.3
245 - 13762 mRNA_5394 0.13 0.6
271 - 13762 mRNA_5394 0.16 -0.2
276 - 13762 mRNA_5394 0.16 -1.7
277 + 13762 mRNA_5394 0.16 -1.1
280 - 13762 mRNA_5394 0.17 0.8
306 + 13762 mRNA_5394 0.19 -0.2
317 - 13762 mRNA_5394 0.21 0.4
345 + 13762 mRNA_5394 0.23 0.0
345 - 13762 mRNA_5394 0.23 -3.2
347 + 13762 mRNA_5394 0.24 0.5
359 - 13762 mRNA_5394 0.25 -3.1
387 - 13762 mRNA_5394 0.28 1.1
399 + 13762 mRNA_5394 0.29 1.1
434 + 13762 mRNA_5394 0.33 -0.0
447 - 13762 mRNA_5394 0.34 1.5
485 - 13762 mRNA_5394 0.38 -0.2
543 + 13762 mRNA_5394 0.44 0.0
649 + 13762 mRNA_5394 0.55 0.9
667 + 13762 mRNA_5394 0.57 -0.8
667 - 13762 mRNA_5394 0.57 2.2
678 - 13762 mRNA_5394 0.58 -0.6
718 + 13762 mRNA_5394 0.63 0.8
723 + 13762 mRNA_5394 0.63 -0.8
802 + 13762 mRNA_5394 0.71 -0.5
806 + 13762 mRNA_5394 0.72 1.1
905 - 13762 mRNA_5394 0.82 0.3
911 + 13762 mRNA_5394 0.83 1.5
965 + 13762 mRNA_5394 0.88 -0.3
966 + 13762 mRNA_5394 0.89 0.8
968 + 13762 mRNA_5394 0.89 -0.1
1,014 - 1.3
1,084 - -1.5
1,103 - 0.2
1,110 + 0.5
1,245 - 13763 mRNA_5395 0.11 -2.9
1,260 - 13763 mRNA_5395 0.13 -0.4
1,376 - 13763 mRNA_5395 0.27 -0.3
1,438 + 13763 mRNA_5395 0.34 -0.2
1,438 + 13763 mRNA_5395 0.34 1.5
1,438 + 13763 mRNA_5395 0.34 0.2
1,523 + 13763 mRNA_5395 0.44 0.9
1,528 - 13763 mRNA_5395 0.45 0.6
1,533 + 13763 mRNA_5395 0.45 1.0
1,538 + 13763 mRNA_5395 0.46 -3.9
1,538 - 13763 mRNA_5395 0.46 -0.7
1,556 + 13763 mRNA_5395 0.48 0.1
1,639 + 13763 mRNA_5395 0.58 0.7
1,854 - 13763 mRNA_5395 0.83 1.8
1,855 - 13763 mRNA_5395 0.83 1.0
1,887 - 13763 mRNA_5395 0.87 -0.1
1,908 - 13763 mRNA_5395 0.89 -2.4
2,000 - -0.7
2,009 + 0.5