Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5235

Experiments: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5234: 13602 - KOG0725 Reductases with broad range of substrate specificities, at 224900 to 226337 13602 mRNA_5235: 13603 - KOG1178 Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes, at 226852 to 231804 13603 mRNA_5236: 13604 - KOG2031 Tyrosyl-DNA phosphodiesterase, at 232008 to 233871 13604

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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226,489 - 0.5
226,506 + 1.0
226,520 - -0.0
226,544 + -0.1
226,576 + -0.4
226,578 + -1.0
226,579 - 0.7
226,656 + 1.2
226,662 - -0.3
226,666 - 0.0
226,757 - 1.0
226,767 - 0.2
226,784 - 1.6
226,785 - 0.8
226,805 - -1.0
226,913 + 2.2
227,077 + 0.6
227,103 + 0.5
227,225 + -0.9
227,388 - 13603 mRNA_5235 0.11 0.3
227,531 + 13603 mRNA_5235 0.14 -0.0
227,558 + 13603 mRNA_5235 0.14 -0.0
227,675 - 13603 mRNA_5235 0.17 0.4
228,241 - 13603 mRNA_5235 0.28 -0.3
228,267 + 13603 mRNA_5235 0.29 1.1
228,288 + 13603 mRNA_5235 0.29 -0.9
228,594 + 13603 mRNA_5235 0.35 -0.8
228,673 - 13603 mRNA_5235 0.37 0.2
229,118 + 13603 mRNA_5235 0.46 0.8
229,147 + 13603 mRNA_5235 0.46 3.0
229,392 - 13603 mRNA_5235 0.51 0.1
229,730 + 13603 mRNA_5235 0.58 0.0
229,989 + 13603 mRNA_5235 0.63 0.2
230,309 + 13603 mRNA_5235 0.70 1.0
230,431 - 13603 mRNA_5235 0.72 -0.5
230,569 - 13603 mRNA_5235 0.75 0.5
231,026 + 13603 mRNA_5235 0.84 0.7
231,028 - 13603 mRNA_5235 0.84 0.1
231,292 + 13603 mRNA_5235 0.90 0.4
231,329 + 1.7
231,401 + 0.7
231,730 + -0.4
231,736 + 0.7
231,862 + 0.9
231,863 + 0.3
231,869 - -1.3
231,876 - -0.1
231,894 - -0.2
232,012 - -0.6
232,185 - -0.1
232,190 + 0.0
232,200 - 13604 mRNA_5236 0.10 -0.0
232,635 - 13604 mRNA_5236 0.34 -0.3
232,646 + 13604 mRNA_5236 0.34 2.0
232,776 - 13604 mRNA_5236 0.41 0.1