Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5131

Experiments: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5130: 13498 - Hypothetical Protein, at 1829263 to 1829910 13498 mRNA_5131: 13499 - Hypothetical Protein, at 1830077 to 1833638 13499 mRNA_5132: 13500 - K03025 RPC6, POLR3F DNA-directed RNA polymerase III subunit RPC6, at 1833985 to 1836173 13500

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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1,829,136 + 0.3
1,829,249 + -0.8
1,829,696 + 13498 mRNA_5130 0.67 0.5
1,829,953 + 1.0
1,829,966 + -0.3
1,830,093 - 0.9
1,830,267 - -0.6
1,830,597 - 13499 mRNA_5131 0.15 -0.1
1,830,597 - 13499 mRNA_5131 0.15 -0.2
1,830,680 - 13499 mRNA_5131 0.17 -0.2
1,831,406 - 13499 mRNA_5131 0.37 -0.0
1,831,553 - 13499 mRNA_5131 0.41 0.4
1,831,945 + 13499 mRNA_5131 0.52 1.4
1,832,125 + 13499 mRNA_5131 0.57 1.2
1,832,316 - 13499 mRNA_5131 0.63 0.8
1,832,455 - 13499 mRNA_5131 0.67 0.4
1,832,747 + 13499 mRNA_5131 0.75 -0.4
1,832,904 - 13499 mRNA_5131 0.79 1.1
1,832,956 + 13499 mRNA_5131 0.81 1.2
1,833,062 + 13499 mRNA_5131 0.84 0.6
1,833,064 + 13499 mRNA_5131 0.84 0.9
1,833,204 + 13499 mRNA_5131 0.88 -0.5
1,833,216 - 13499 mRNA_5131 0.88 -2.1
1,833,221 - 13499 mRNA_5131 0.88 -0.6
1,833,235 - 13499 mRNA_5131 0.89 1.7
1,833,329 - -1.1
1,833,341 - -0.2
1,833,350 - -1.9
1,833,352 - -0.9
1,833,371 - 2.1
1,833,371 - 1.5
1,833,383 - -2.0
1,833,394 - -0.9
1,833,397 + -3.4
1,833,398 + 0.7
1,833,398 - -2.3
1,833,413 - 1.0
1,833,415 + -0.4
1,833,421 + -2.0
1,833,423 + -0.9
1,833,426 + 0.7
1,833,430 + 2.7
1,833,450 - -0.7
1,833,487 - 0.8
1,833,487 - 0.3
1,833,488 - 0.3
1,833,495 + -1.2
1,833,498 + -0.5
1,833,500 + 1.3
1,833,503 - 1.1
1,833,508 - -0.3
1,833,514 + -0.9
1,833,531 + -0.8
1,833,563 - 1.7
1,833,564 + -0.0
1,833,570 - 0.4
1,833,572 + 0.7
1,833,573 - -0.8
1,833,576 - 1.5
1,833,576 - -0.6
1,833,578 + -0.6
1,833,581 - 0.6
1,833,581 + 0.9
1,833,583 - 1.3
1,833,587 - 0.7
1,833,591 - 0.5
1,833,603 + -0.0
1,833,605 + 1.2
1,833,605 - 1.5
1,833,606 + 1.3
1,833,618 + 1.6
1,833,620 + -0.4
1,833,627 - 1.4
1,833,627 - 0.5
1,833,649 + -2.9
1,833,653 + -0.4
1,833,661 - -0.4
1,833,661 - -0.1
1,833,663 + 0.8
1,833,663 + 0.5
1,833,663 - 2.0
1,833,664 - 0.3
1,833,666 + -0.2
1,833,671 + 0.5
1,833,700 - 0.2
1,833,721 - -0.1
1,833,721 + 0.5
1,833,731 + 1.6
1,833,733 - -0.5
1,833,739 - 0.6
1,833,741 + -0.2
1,833,748 + 0.7
1,833,750 - 1.0
1,833,753 - 0.7
1,833,753 - 1.1
1,833,754 - -0.0
1,833,762 + 0.8
1,833,769 - -0.2
1,833,770 - 1.1
1,833,772 + -0.0
1,833,776 + 1.4
1,833,777 + -0.1
1,833,781 + 0.1
1,833,781 + 0.7
1,833,789 - -0.5
1,833,792 + -0.2
1,833,792 + -0.2
1,833,794 - -1.7
1,833,794 + -0.3
1,833,800 - 0.3
1,833,801 - 0.4
1,833,802 + 1.0
1,833,809 + -0.5
1,833,931 + -0.8
1,833,938 - 0.9
1,833,947 - 0.6
1,834,208 - 13500 mRNA_5132 0.10 -0.4