Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5110

Experiments: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5109: 13477 - K17605 PPP2R4, PTPA serine/threonine-protein phosphatase 2A activator, at 1781885 to 1783353 13477 mRNA_5110: 13478 - HMMPfam-Phosphotyrosyl phosphate activator (PTPA) protein-PF03095,SUPERFAMILY--SSF140984, at 1783616 to 1785108 13478 mRNA_5111: 13479 - K19881 BUD7, BCH1 Chs5-Arf1p-binding protein BUD7/BCH1, at 1785372 to 1788381 13479

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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1,783,598 + 1.3
1,783,743 - -0.3
1,783,866 - 13478 mRNA_5110 0.17 -2.0
1,784,057 + 13478 mRNA_5110 0.30 -0.6
1,784,158 - 13478 mRNA_5110 0.36 0.4
1,784,166 + 13478 mRNA_5110 0.37 0.7
1,784,477 - 13478 mRNA_5110 0.58 -0.0
1,784,754 + 13478 mRNA_5110 0.76 -0.8
1,784,901 - 13478 mRNA_5110 0.86 0.7
1,785,008 - 0.6
1,785,877 + 13479 mRNA_5111 0.17 -0.2
1,785,900 - 13479 mRNA_5111 0.18 0.1
1,785,919 + 13479 mRNA_5111 0.18 1.4
1,786,059 - 13479 mRNA_5111 0.23 1.6
1,786,077 + 13479 mRNA_5111 0.23 0.8