Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5027

Experiments: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5026: 13394 - K01698 hemB, ALAD porphobilinogen synthase, at 1583295 to 1584679 13394 mRNA_5027: 13395 - HMMPfam-Cryptococcal mannosyltransferase 1-PF11735, at 1585224 to 1587309 13395

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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1,584,786 - 0.4
1,584,789 + 0.0
1,584,792 - 0.1
1,584,804 + 0.7
1,584,828 + 1.2
1,584,854 + -0.7
1,584,856 + 1.3
1,584,862 - 1.0
1,584,879 - -0.3
1,584,880 - 0.9
1,584,884 - -0.3
1,584,887 + 0.0
1,584,887 - 1.0
1,584,887 - -0.6
1,584,889 + 2.3
1,584,894 + -0.2
1,584,897 + 0.7
1,584,897 + -0.6
1,584,916 + 0.6
1,584,923 - 0.2
1,584,994 - -0.5
1,584,997 + 1.3
1,585,018 - -0.9
1,585,032 + -0.2
1,585,033 + 0.7
1,585,034 - -1.3
1,585,037 + 2.0
1,585,038 + 0.6
1,585,038 - 0.4
1,585,050 - -0.6
1,585,051 + 0.7
1,585,054 - 0.7
1,585,064 - 0.3
1,585,067 - -2.3
1,585,068 - 1.2
1,585,079 + 0.2
1,585,081 - 2.4
1,585,094 - 0.3
1,585,096 + 0.1
1,585,102 + 1.6
1,585,116 + 0.3
1,585,134 - -0.2
1,585,227 - 0.6
1,585,239 + -2.9
1,585,256 - -0.2
1,585,256 - -0.3
1,585,568 - 13395 mRNA_5027 0.16 -0.3
1,585,582 + 13395 mRNA_5027 0.17 -0.7
1,585,590 - 13395 mRNA_5027 0.18 -0.9
1,585,606 - 13395 mRNA_5027 0.18 1.0
1,586,025 + 13395 mRNA_5027 0.38 0.8
1,586,338 - 13395 mRNA_5027 0.53 1.5
1,586,878 - 13395 mRNA_5027 0.79 -1.1
1,587,192 - 0.2
1,587,453 - 0.3
1,587,486 - -0.4
1,587,487 + 1.1
1,587,601 - 1.7
1,587,648 + 0.8
1,587,754 - -0.7
1,587,779 + 0.9
1,587,901 - -0.1
1,587,915 + 0.2
1,587,923 - -0.0
1,587,940 + 1.5
1,588,061 + 1.1
1,588,092 - -2.0
1,588,209 + 0.2
1,588,210 + -1.5
1,588,225 + 2.9
1,588,225 + -0.2