Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4610

Experiments: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4610: 12978 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 578505 to 580784 12978 mRNA_4611: 12979 - K07652 vicK two-component system, OmpR family, sensor histidine kinase VicK, at 581110 to 587880 12979

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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577,511 - -0.2
577,693 - -0.8
577,696 + -0.7
578,122 - 0.8
578,248 - 1.4
578,260 + 0.9
578,264 + -0.5
578,270 + -1.4
578,272 + 0.2
578,277 + 1.3
578,280 - -1.8
578,290 - 0.1
578,358 - 2.3
578,411 - 0.1
578,411 + 0.6
578,427 - -0.2
578,435 - 0.2
578,444 + -0.6
578,721 - -0.9
578,731 - 1.6
578,739 + 12978 mRNA_4610 0.10 3.1
578,747 + 12978 mRNA_4610 0.11 2.1
578,752 + 12978 mRNA_4610 0.11 2.1
578,879 - 12978 mRNA_4610 0.16 -0.8
578,916 + 12978 mRNA_4610 0.18 1.0
578,946 - 12978 mRNA_4610 0.19 -0.1
579,009 - 12978 mRNA_4610 0.22 0.1
579,040 + 12978 mRNA_4610 0.23 -0.2
579,320 - 12978 mRNA_4610 0.36 -0.9
579,321 + 12978 mRNA_4610 0.36 -1.4
579,765 + 12978 mRNA_4610 0.55 0.5
580,383 + 12978 mRNA_4610 0.82 -0.6
580,939 + 0.3
581,229 - 0.1
581,556 + 0.5