Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4395

Experiments: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4394: 12762 - ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SUPERFAMILY--SSF57701, at 85046 to 87560 12762 mRNA_4395: 12763 - HMMPfam-RTA1 like protein-PF04479, at 88066 to 89251 12763 mRNA_4396: 12764 - BLAST NAD(P)-dependent alcohol dehydrogenase [Mycena chloro..., at 89473 to 89864 12764 mRNA_4397: 12765 - HMMPfam-Alcohol dehydrogenase GroES-like domain-PF08240,SUPERFAMILY--SSF50129, at 90015 to 90968 12765

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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87,307 - 12762 mRNA_4394 0.90 0.1
87,330 - -3.1
87,330 - 0.3
87,331 - 0.9
87,449 + -1.7
87,461 + 0.4
87,470 + 0.8
87,503 + 0.8
87,628 - 1.2
87,652 - 0.7
87,674 + 0.1
87,931 + 0.4
87,999 + 0.3
88,149 - 1.1
88,843 - 12763 mRNA_4395 0.66 1.5
88,845 + 12763 mRNA_4395 0.66 1.2
88,981 - 12763 mRNA_4395 0.77 1.1
89,115 - 12763 mRNA_4395 0.88 0.8
89,441 - 0.7
89,921 + 2.0
90,004 - 0.7