Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4375

Experiments: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4374: 12742 - K00232 E1.3.3.6, ACOX1, ACOX3 acyl-CoA oxidase, at 43132 to 46033 12742 mRNA_4375: 12743 - K14209 SLC36A, PAT solute carrier family 36 (proton-coupled amino acid transporter), at 46350 to 49394 12743 mRNA_4376: 12744 - BLAST glycosyltransferase family 25 [Puccinia cf. psidii AE..., at 49826 to 51100 12744

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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45,445 + 12742 mRNA_4374 0.80 0.8
45,452 - 12742 mRNA_4374 0.80 -1.3
45,462 + 12742 mRNA_4374 0.80 0.2
45,471 - 12742 mRNA_4374 0.81 -1.2
45,741 - 12742 mRNA_4374 0.90 -0.9
45,744 - -0.7
45,744 + -0.2
45,773 + 1.0
45,906 + 1.5
45,912 - 0.6
45,918 - -1.0
45,996 - -1.8
46,018 + 4.1
46,034 - -0.9
46,055 - -0.5
46,059 + -0.4
46,060 + -0.3
46,074 + -0.2
46,155 - 0.1
46,186 + -2.3
46,189 - 0.2
46,191 + -0.5
46,192 + -1.9
46,195 - 0.0
46,201 + -0.1
46,202 + -0.1
46,203 - -0.2
46,205 + 0.3
46,208 - -0.9
46,208 - 0.6
46,217 + 1.3
46,217 + 0.3
46,219 - 0.1
46,227 - -0.3
46,230 + 0.2
46,233 + 1.6
46,235 + 0.4
46,237 - -0.3
46,237 + -0.1
46,287 + -0.0
46,334 + 0.3
46,342 - -1.4
46,346 + 0.3
46,355 + 0.3
46,355 - 0.5
46,367 + 1.9
46,367 + -0.1
46,367 - 2.6
46,368 - 0.5
46,369 - -0.1
46,383 - -0.3
46,384 + 0.4
46,387 + 2.4
46,623 - 0.9
46,759 + 12743 mRNA_4375 0.13 0.6
46,940 - 12743 mRNA_4375 0.19 0.9
46,947 - 12743 mRNA_4375 0.20 0.1
46,956 + 12743 mRNA_4375 0.20 0.0
46,976 + 12743 mRNA_4375 0.21 0.4
47,119 + 12743 mRNA_4375 0.25 -0.0
47,155 - 12743 mRNA_4375 0.26 1.9
47,579 + 12743 mRNA_4375 0.40 0.3
47,664 + 12743 mRNA_4375 0.43 0.5
47,758 + 12743 mRNA_4375 0.46 0.2
47,837 - 12743 mRNA_4375 0.49 -0.9
47,956 + 12743 mRNA_4375 0.53 1.1
48,013 + 12743 mRNA_4375 0.55 -0.4
48,024 - 12743 mRNA_4375 0.55 -0.4
48,445 + 12743 mRNA_4375 0.69 -0.9
48,715 - 12743 mRNA_4375 0.78 2.0
48,716 - 12743 mRNA_4375 0.78 -1.6
48,905 + 12743 mRNA_4375 0.84 1.2
49,014 + 12743 mRNA_4375 0.87 -0.5
49,028 - 12743 mRNA_4375 0.88 1.1
49,176 + 0.1
49,334 - 0.7
49,348 + 0.8
49,351 - 0.8
49,397 - 3.0
49,415 - 0.7
49,433 - 0.8
49,446 - -0.8
49,628 - 0.5
49,747 - 0.5
49,901 + 2.9
50,136 + 12744 mRNA_4376 0.24 2.0
50,139 - 12744 mRNA_4376 0.25 0.3