Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4252

Experiments: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4251: 12619 - K07560 dtd, DTD1 D-tyrosyl-tRNA(Tyr) deacylase, at 1714750 to 1715768 12619 mRNA_4252: 12620 - HMMPfam-Carboxymuconolactone decarboxylase family-PF02627,HMMPfam-Alpha/beta hydrolase family-PF12697,PRINTS-Alpha/beta hydrolase fold signature-PR00111,SUPERFAMILY--SSF53474,SUPERFAMILY--SSF69118, at 1715834 to 1717453 12620 mRNA_4253: 12621 - BLAST Dimeric alpha-beta barrel [Ceraceosorus bombacis], at 1718073 to 1718994 12621

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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1,714,851 + 1.1
1,714,852 + 12619 mRNA_4251 0.10 -1.1
1,714,856 + 12619 mRNA_4251 0.10 0.3
1,714,877 - 12619 mRNA_4251 0.12 1.0
1,714,931 - 12619 mRNA_4251 0.18 0.3
1,715,148 - 12619 mRNA_4251 0.39 -0.4
1,715,426 - 12619 mRNA_4251 0.66 0.2
1,715,592 + 12619 mRNA_4251 0.83 0.6
1,715,613 - 12619 mRNA_4251 0.85 -0.4
1,715,884 + 0.3
1,716,434 + 12620 mRNA_4252 0.37 0.4
1,716,770 + 12620 mRNA_4252 0.58 -0.2
1,716,921 - 12620 mRNA_4252 0.67 1.4
1,716,925 - 12620 mRNA_4252 0.67 -0.0
1,717,191 - 12620 mRNA_4252 0.84 0.4
1,717,266 + 12620 mRNA_4252 0.88 -0.7
1,717,266 + 12620 mRNA_4252 0.88 1.3
1,717,372 + 1.5
1,717,487 + 1.0
1,717,514 - -0.0
1,717,523 + -0.5
1,717,541 + 0.5
1,717,572 - 0.1
1,717,680 - 0.2
1,717,822 - -0.0
1,717,854 + -0.1
1,717,855 + -4.0
1,717,861 - -0.1
1,718,434 + 12621 mRNA_4253 0.39 0.2