Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4209

Experiments: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4208: 12576 - K17919 SNX4 sorting nexin-4, at 1613612 to 1615514 12576 mRNA_4209: 12577 - ProSitePatterns-Tyrosine protein kinases specific active-site signature.-PS00109,SUPERFAMILY--SSF56112, at 1615699 to 1618403 12577 mRNA_4210: 12578 - K19985 EXOC6, SEC15 exocyst complex component 6, at 1618796 to 1621938 12578

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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1,615,291 - 12576 mRNA_4208 0.88 -0.1
1,615,448 - -0.1
1,615,451 + -0.5
1,615,546 - 1.6
1,615,579 + -0.2
1,615,723 - -3.7
1,615,740 + -0.8
1,615,741 + 1.1
1,615,844 + -0.4
1,615,893 - -1.3
1,615,930 + 1.8
1,616,165 + 12577 mRNA_4209 0.17 -0.3
1,616,170 - 12577 mRNA_4209 0.17 0.7
1,616,192 - 12577 mRNA_4209 0.18 0.0
1,616,199 + 12577 mRNA_4209 0.18 1.7
1,616,310 + 12577 mRNA_4209 0.23 2.5
1,616,715 + 12577 mRNA_4209 0.38 0.1
1,616,926 + 12577 mRNA_4209 0.45 0.9
1,616,945 + 12577 mRNA_4209 0.46 0.3
1,617,465 + 12577 mRNA_4209 0.65 -0.4
1,617,594 - 12577 mRNA_4209 0.70 -1.1
1,618,011 - 12577 mRNA_4209 0.85 1.1
1,618,038 + 12577 mRNA_4209 0.86 2.1
1,618,202 - 0.3
1,618,241 + -1.2
1,618,254 - 0.6
1,618,255 + 0.8
1,618,448 - 1.0
1,618,470 + 0.6
1,618,528 + 1.3
1,618,601 - 0.1
1,618,757 - -0.0
1,619,150 - 12578 mRNA_4210 0.11 0.3
1,619,391 + 12578 mRNA_4210 0.19 -1.8