Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4188

Experiments: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4187: 12555 - K01897 ACSL, fadD long-chain acyl-CoA synthetase, at 1566413 to 1568898 12555 mRNA_4188: 12556 - KOG4372 Predicted alpha/beta hydrolase, at 1569066 to 1571020 12556 mRNA_4189: 12557 - Hypothetical Protein, at 1571432 to 1574972 12557

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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1,568,190 - 12555 mRNA_4187 0.71 -0.0
1,568,342 - 12555 mRNA_4187 0.78 2.6
1,568,631 - 12555 mRNA_4187 0.89 -0.6
1,568,645 - 12555 mRNA_4187 0.90 -1.7
1,568,660 + 1.3
1,568,748 - 0.5
1,568,763 - -0.3
1,568,795 - -0.7
1,568,797 + -1.0
1,568,816 + -0.2
1,568,910 - -0.5
1,568,924 - 0.6
1,568,927 + 1.2
1,568,934 - 0.5
1,568,935 + 2.0
1,568,937 - -0.2
1,568,940 + 0.0
1,568,940 + 0.2
1,568,943 - 0.7
1,568,944 - -0.2
1,568,945 - 0.7
1,568,946 + -0.1
1,568,946 - -0.2
1,568,947 - 0.3
1,568,951 - -0.9
1,568,953 - 0.5
1,568,954 - 1.1
1,568,958 + -1.5
1,568,958 - 1.5
1,568,958 + -0.2
1,568,971 - 0.3
1,568,974 - -0.6
1,568,975 + 1.1
1,568,976 - 0.6
1,568,978 + 0.6
1,568,981 + 0.0
1,569,017 - 1.1
1,569,035 + 0.7
1,569,126 + 0.3
1,569,243 - 2.0
1,569,590 + 12556 mRNA_4188 0.27 0.1
1,569,729 + 12556 mRNA_4188 0.34 1.4
1,569,848 - 12556 mRNA_4188 0.40 -0.2
1,569,848 - 12556 mRNA_4188 0.40 -0.0
1,570,879 - -0.3
1,570,883 + 2.1
1,571,010 - -1.3
1,571,019 + -0.3
1,571,145 - 0.4
1,571,156 + -0.9
1,571,166 + -2.8
1,571,172 - 0.4
1,571,182 + -0.1
1,571,182 + 0.8
1,571,182 + 0.4
1,571,183 + 2.3
1,571,184 - 0.9
1,571,191 + -0.2
1,571,197 - 0.7
1,571,202 - 0.5
1,571,202 - -0.0
1,571,207 + 1.0
1,571,222 + 0.6