Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4041

Experiments: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4040: 12408 - K06997 yggS, PROSC PLP dependent protein, at 1219882 to 1220973 12408 mRNA_4041: 12409 - HMMPfam-Sds3-like-PF08598, at 1221368 to 1222599 12409 mRNA_4042: 12410 - KOG0807 Carbon-nitrogen hydrolase, at 1222725 to 1223895 12410

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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1,220,425 + 12408 mRNA_4040 0.50 0.2
1,220,581 + 12408 mRNA_4040 0.64 -0.2
1,220,599 + 12408 mRNA_4040 0.66 -0.7
1,220,701 - 12408 mRNA_4040 0.75 -0.2
1,220,724 - 12408 mRNA_4040 0.77 2.6
1,220,858 - 12408 mRNA_4040 0.89 1.5
1,220,873 - 2.1
1,220,879 - -0.6
1,220,884 - 1.1
1,220,896 - 0.2
1,220,901 - -0.2
1,220,972 - 0.0
1,221,016 - 0.5
1,221,017 - 0.3
1,221,021 + -0.8
1,221,025 - 0.3
1,221,026 + -0.4
1,221,047 - 0.7
1,221,049 - 0.5
1,221,055 - -0.4
1,221,055 - 0.6
1,221,057 + -1.5
1,221,057 + 0.2
1,221,066 + 0.1
1,221,070 - 2.0
1,221,070 + 2.0
1,221,074 + 0.8
1,221,075 - 2.8
1,221,672 + 12409 mRNA_4041 0.25 -0.8
1,222,533 - 1.0
1,222,545 + 2.0
1,222,969 - 12410 mRNA_4042 0.21 -0.6
1,223,223 - 12410 mRNA_4042 0.43 -0.1
1,223,414 + 12410 mRNA_4042 0.59 0.3