Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3981

Experiments: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3980: 12348 - KOG1196 Predicted NAD-dependent oxidoreductase, at 1056384 to 1057964 12348 mRNA_3981: 12349 - K10660 MARCH5 E3 ubiquitin-protein ligase MARCH5, at 1058258 to 1059791 12349 mRNA_3982: 12350 - K19525 VPS13A_C vacuolar protein sorting-associated protein 13A/C, at 1059957 to 1071266 12350

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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1,057,609 + 12348 mRNA_3980 0.77 0.3
1,057,943 + 0.5
1,058,073 - 2.2
1,058,243 + 0.5
1,058,675 - 12349 mRNA_3981 0.27 -0.7
1,058,676 - 12349 mRNA_3981 0.27 0.5
1,058,964 + 12349 mRNA_3981 0.46 0.4
1,059,071 - 12349 mRNA_3981 0.53 -0.6
1,059,099 - 12349 mRNA_3981 0.55 0.1
1,059,119 - 12349 mRNA_3981 0.56 -0.9
1,059,555 - 12349 mRNA_3981 0.85 -0.7
1,059,681 + -2.0
1,059,838 + 0.0
1,059,844 + 0.6
1,059,844 + 1.8
1,059,878 - 1.4
1,059,975 - 0.5
1,059,978 + 0.5
1,059,983 - 0.4
1,060,073 - -1.0
1,060,103 + -0.2